View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10371_low_2 (Length: 593)
Name: NF10371_low_2
Description: NF10371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10371_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 14 - 336
Target Start/End: Original strand, 39627207 - 39627529
Alignment:
| Q |
14 |
agaagcaaaggccaatcttccattgtacacgtatgaataagattattattgctgcgttgatagccatctattacctgtaccttttagaagaagaaagtga |
113 |
Q |
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| T |
39627207 |
agaagcaaaggccactgttcggttgtacgcatatgaataagattattattgctgcgttgataggcatctattacctgtacattttggaagaagaaagtga |
39627306 |
T |
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| Q |
114 |
tagtgaaagtgaagacacggacactgataatgatacagatactgatatcgatacagaaacggaaagtactggaaggacaaatcaagttcttgatgatcaa |
213 |
Q |
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| T |
39627307 |
tagtgaaagtgaagacacggacactgataatgatacagatactgatatcgatacagaaacggaaagtactggaaggacaaatcaagttcttgatgatcaa |
39627406 |
T |
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| Q |
214 |
tagaaaaggaaacagctgcaattttgttagtacaaaagggatgattcggaaacttgagctttatgctctcataacttgagagccctgttacaatgtgact |
313 |
Q |
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| T |
39627407 |
tagaaaaggaaacagctgcaattttgttagtacaaaagggatgattcggaaacttgagctttatgctctcataacttgagagccctgttacaatgtgact |
39627506 |
T |
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| Q |
314 |
aatagataagaaaaatgacatgc |
336 |
Q |
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|||||||||||||||||| |||| |
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| T |
39627507 |
aatagataagaaaaatgaaatgc |
39627529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 14 - 336
Target Start/End: Original strand, 39616485 - 39616819
Alignment:
| Q |
14 |
agaagcaaaggccaatcttccattgtacacgtatgaataagattattattgctgcgttgatagccatctattacctgtaccttttagaagaagaaagtga |
113 |
Q |
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|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
39616485 |
agaatcaaaggccaatcttccattgtacgcgtatgaataagattattattgctgcgttgataggcatctattacctgtaccttttagaagaagaaagtga |
39616584 |
T |
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| Q |
114 |
tagtgaaagtgaagacacggacactgataatgatacagatactgatatcgatacagaaacggaaagtactggaaggacaaatcaagttcttgatgatcaa |
213 |
Q |
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| T |
39616585 |
cagtgaaagtgaagacag------tgatagtgatacagatactgatattgatacggaaactgaaagtactggaaggacaaatgaagttcctgatgatcaa |
39616678 |
T |
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| Q |
214 |
tagaaaaggaaacagctgcaattttgttagtacaaaagggatgattcggaaacttgagctttatgctctcataactt------------------gagag |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
39616679 |
tagaaaaggaaacagctgcaattttgttagtacaaaagggatgattcggaaacttgagctttatgctctcataagttaaattgcttgtgaattttgagag |
39616778 |
T |
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| Q |
296 |
ccctgttacaatgtgactaatagataagaaaaatgacatgc |
336 |
Q |
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| T |
39616779 |
ccatgttacaatgtgactaatagataagaaaaatgacatgc |
39616819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 400 - 574
Target Start/End: Original strand, 39627593 - 39627767
Alignment:
| Q |
400 |
gtagttttggatgattgaactaaactgccattagaaacaattttgcctctttgctatgcacacctttaatttctgtttttcatgttatcctaaagttagg |
499 |
Q |
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| T |
39627593 |
gtagttttggatgattgaactaaactgccattagaaacaattttgcctctttgctatgcacacctttaatttctgtttttcatgttatcctaaagttagg |
39627692 |
T |
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| Q |
500 |
tctgttagtatttgttctgctcatggaggagattcattcagtattgatttatttaaccaacaacagtgtggaaat |
574 |
Q |
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| T |
39627693 |
tctgttagtatttgttctgctcatggaggagattcattcagtattgatttatttaaccaccaacagtgtggaaat |
39627767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 400 - 574
Target Start/End: Original strand, 39616880 - 39617059
Alignment:
| Q |
400 |
gtagttttggatgattgaactaaactgccattagaaacaattttgcctctttgctatgcacacctttaatttct---------gtttttcatgttatcct |
490 |
Q |
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|||||||||||| ||||||||||| |||||| |||||||||||| ||||||||||||||||| |||| |||||| ||||||||||||| ||| |
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| T |
39616880 |
gtagttttggattattgaactaaagtgccataagaaacaatttttcctctttgctatgcacagctttgatttctgtttcttctgtttttcatgttaccct |
39616979 |
T |
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| Q |
491 |
aaagttaggtctgttagtatttgttctgctcatggaggagattcattcagtattgatttatttaaccaacaacagtgtggaaat |
574 |
Q |
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| T |
39616980 |
aaagtcaggtctgttggtatttgttctgctcatggaggag----attcagtattgatttatttaaccaccaacagtgtggaaat |
39617059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 103 - 232
Target Start/End: Complemental strand, 39583646 - 39583520
Alignment:
| Q |
103 |
gaagaaagtgatagtgaaagtgaagacacggacactgataatgatacagatactgatatcgatacagaaacggaaagtactggaaggacaaatcaagttc |
202 |
Q |
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||||||||||| ||||||||||||||||| ||||| |||| |||||| |||||||||| ||||| ||||| ||||||||| |||||||||| ||||||| |
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| T |
39583646 |
gaagaaagtgacagtgaaagtgaagacacagacacagatagtgatacggatactgatagtgataccgaaactgaaagtacttgaaggacaaaccaagttc |
39583547 |
T |
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| Q |
203 |
ttgatgatcaatagaaaaggaaacagctgc |
232 |
Q |
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||||||||||||||||||||| |||| |
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| T |
39583546 |
---ctgatcaatagaaaaggaaacaactgc |
39583520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 199 - 287
Target Start/End: Original strand, 24200314 - 24200402
Alignment:
| Q |
199 |
gttcttgatgatcaatagaaaaggaaacagctgcaattttgttagtacaaaagggatgattcggaaacttgagctttatgctctcataa |
287 |
Q |
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|||| |||||||||||||||||| |||||||||||| |||||||||| |||||||| |||| ||||||||||||||||||||||||||| |
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| T |
24200314 |
gttcctgatgatcaatagaaaagaaaacagctgcaactttgttagtagaaaagggaagatttggaaacttgagctttatgctctcataa |
24200402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 64 - 142
Target Start/End: Original strand, 47532772 - 47532847
Alignment:
| Q |
64 |
gctgcgttgatagccatctattacctgtaccttttagaagaagaaagtgatagtgaaagtgaagacacggacactgata |
142 |
Q |
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||||| |||||| ||||||| ||||||||||||| |||| ||||||| ||||||||||||| ||| || ||||||| |
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| T |
47532772 |
gctgccttgatatgcatctatgacctgtaccttttggaag---aaagtgacagtgaaagtgaagccacagatactgata |
47532847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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