View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10371_low_20 (Length: 254)
Name: NF10371_low_20
Description: NF10371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10371_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 9e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 32178070 - 32178290
Alignment:
| Q |
1 |
caacacactaaaaaacatgagtgaacagaaagattcaaaattcaaatattgattaattaaaacttgcattatgaagagaca-gattgggttagaaaatat |
99 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
32178070 |
caacacactaaaaaacatgagtgaacagaaagattcgaaattcaaatattgattaattaaaacttgcattatgaagagaaattattgggttagaaaatat |
32178169 |
T |
|
| Q |
100 |
ttaaaaacatgagtgatgttgaattaggatgataatccaaaataaggacaaaggaaaatgacaattttatggattattttaaacgcgtattcctcgatca |
199 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32178170 |
ttaaaaacatgagtgatgttgaatt-------------------aggacaaaggaaaatgacaattttatggattattttaaacgcgtattcctcgatca |
32178250 |
T |
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| Q |
200 |
caattattcatggatgtatgatttttgtctttagcttcat |
239 |
Q |
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||||||||||| |||||||||||||||||||||||||||| |
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| T |
32178251 |
caattattcatcgatgtatgatttttgtctttagcttcat |
32178290 |
T |
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