View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10371_low_22 (Length: 250)
Name: NF10371_low_22
Description: NF10371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10371_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 9946329 - 9946566
Alignment:
| Q |
1 |
ctacctttatacttctttttaagatactcgttatcaaagatttctaaacacattacacccnnnnnnnntgtttcctaaacactcagatttcattaggacg |
100 |
Q |
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| T |
9946329 |
ctacctttatacttctttttaagatactcgttatcaaagatttctaaacacattacacccaaaaaaaatgttccctaaacactcagatttcattaggacg |
9946428 |
T |
|
| Q |
101 |
ataaagtttaaatataaatatttaaaaaattaacacaacatcaactataatttgnnnnnnnnngtatagaaaatatatctaaagataaattaaagttaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
9946429 |
ataaagtttaaatataaatatttaaaaaattaacacaacatcaactataatttgaaaaaaaaagtatataaaatatatctaaagataaattaaagttaat |
9946528 |
T |
|
| Q |
201 |
ccacttaagttggtatactggtgttggtttgagaccta |
238 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||| |
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| T |
9946529 |
ccacttaggttggtatactggtgttggtttgagaccta |
9946566 |
T |
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