View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10371_low_24 (Length: 249)

Name: NF10371_low_24
Description: NF10371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10371_low_24
NF10371_low_24
[»] scaffold0627 (1 HSPs)
scaffold0627 (1-233)||(4562-4793)
[»] chr6 (1 HSPs)
chr6 (1-201)||(16716293-16716492)
[»] chr5 (16 HSPs)
chr5 (9-194)||(8548071-8548256)
chr5 (1-48)||(8636966-8637013)
chr5 (1-48)||(8644311-8644358)
chr5 (1-59)||(8529031-8529089)
chr5 (85-131)||(8677809-8677855)
chr5 (1-43)||(8677918-8677960)
chr5 (1-46)||(2904958-2905003)
chr5 (1-46)||(8535602-8535647)
chr5 (89-195)||(8528886-8528992)
chr5 (85-131)||(8636871-8636917)
chr5 (1-43)||(8641475-8641517)
chr5 (89-195)||(9074780-9074886)
chr5 (1-46)||(2856850-2856895)
chr5 (1-46)||(2874460-2874505)
chr5 (1-58)||(9074683-9074740)
chr5 (1-33)||(1600258-1600290)
[»] chr4 (2 HSPs)
chr4 (1-59)||(9443192-9443250)
chr4 (89-195)||(9443047-9443153)
[»] chr1 (1 HSPs)
chr1 (85-131)||(5130811-5130857)


Alignment Details
Target: scaffold0627 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 4793 - 4562
Alignment:
Q  1 tatggcattggagaatcatggactaaggtttaccagattgatactttgtacaatcctttagcgtggcgtcatcctttgtattttccggtaaaacactttg 100  Q
    ||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4793 tatggcattggtgaatcatggactaaggtttaccacattaatactttgtacaatcctttagcgtggcgtcatcctttgtattttccggtaaaacactttg 4694  T
Q  101 aagagggtgctgctgtattgttacatcattcatatgattgttttacttactatgagcctaataaatattgtgtcaagttttttcgaattcatggggattc 200  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||| | |||||||||||||||||||||||||||||    
T  4693 aagagggtgctgctgtattgttacatcattcatatgatcgttttacttactatg-gcctaatgaatatcgagtcaagttttttcgaattcatggggattc 4595  T
Q  201 taaaggatattttgacgtaattccacatattcc 233  Q
    ||||||||||||||| |||||||||||||||||    
T  4594 taaaggatattttgaagtaattccacatattcc 4562  T

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Target: chr6 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 16716492 - 16716293
Alignment:
Q  1 tatggcattggagaatcatggactaaggtttaccagattgatactttgtacaatcctttagcgtggcgtcatcctttgtattttccggtaaaacactttg 100  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||| ||||| || ||  ||||| ||||||||||||||||||||    
T  16716492 tatggcattggagaatcatggactaaggtttaccacattgatactt-gtacaaacctttatcgtggggtgatgttttgtgttttccggtaaaacactttg 16716394  T
Q  101 aagagggtgctgctgtattgttacatcattcatatgattgttttacttactatgagcctaataaatattgtgtcaagttttttcgaattcatggggattc 200  Q
    ||||||||||||  ||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||| ||||    
T  16716393 aagagggtgctggcgtattgttatatcattcaaatgattgttttacttactatgagcctaataaatatggtgtcaagcgttttcgaattcatgggtattc 16716294  T

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Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 9 - 194
Target Start/End: Original strand, 8548071 - 8548256
Alignment:
Q  9 tggagaatcatggactaaggtttaccagattgatactttgtacaatcctttagcgtggcgtcatcctttgtattttccggtaaaacactttgaagagggt 108  Q
    |||||| |||||||||||| ||||||| ||||||||||||  ||||||||   || |||||||| |||||| ||| ||||||||||||||||||||||||    
T  8548071 tggagagtcatggactaagatttaccacattgatactttgaccaatccttctccgcggcgtcatgctttgtgtttgccggtaaaacactttgaagagggt 8548170  T
Q  109 gctgctgtattgttacatcattcatatgattgttttacttactatgagcctaataaatattgtgtcaagttttttcgaattcatgg 194  Q
    ||||| ||||||||| |||||||||  |||||||||||||||||| | ||  |||||||| | |||||   |||||||||||||||    
T  8548171 gctgccgtattgttatatcattcattggattgttttacttactataaccccgataaatatggagtcaaagattttcgaattcatgg 8548256  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 8637013 - 8636966
Alignment:
Q  1 tatggcattggagaatcatggactaaggtttaccagattgatactttg 48  Q
    ||||||||||||||||||||||||||||||||| | || |||||||||    
T  8637013 tatggcattggagaatcatggactaaggtttacaacatcgatactttg 8636966  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 8644358 - 8644311
Alignment:
Q  1 tatggcattggagaatcatggactaaggtttaccagattgatactttg 48  Q
    |||| |||||||||||||||||||||||||||| | ||||||||||||    
T  8644358 tatgacattggagaatcatggactaaggtttacaacattgatactttg 8644311  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 8529089 - 8529031
Alignment:
Q  1 tatggcattggagaatcatggactaaggtttaccagattgatactttgtacaatccttt 59  Q
    ||||||||||||||||||||||||||| ||||| | || ||||||| || |||||||||    
T  8529089 tatggcattggagaatcatggactaagatttacaacatcgatacttcgttcaatccttt 8529031  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 85 - 131
Target Start/End: Complemental strand, 8677855 - 8677809
Alignment:
Q  85 ccggtaaaacactttgaagagggtgctgctgtattgttacatcattc 131  Q
    |||||||||||||||||||||||||||||  |||||||| |||||||    
T  8677855 ccggtaaaacactttgaagagggtgctgccatattgttatatcattc 8677809  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 8677960 - 8677918
Alignment:
Q  1 tatggcattggagaatcatggactaaggtttaccagattgata 43  Q
    ||||||||||||||||||||||||||||||||| | |||||||    
T  8677960 tatggcattggagaatcatggactaaggtttacaacattgata 8677918  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 2904958 - 2905003
Alignment:
Q  1 tatggcattggagaatcatggactaaggtttaccagattgatactt 46  Q
    ||||||||||||||||||||||||||| ||||| | ||||||||||    
T  2904958 tatggcattggagaatcatggactaagatttacaacattgatactt 2905003  T

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Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 8535647 - 8535602
Alignment:
Q  1 tatggcattggagaatcatggactaaggtttaccagattgatactt 46  Q
    ||||||||||||||||||||||||||| ||||| | ||||||||||    
T  8535647 tatggcattggagaatcatggactaagatttacaacattgatactt 8535602  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 195
Target Start/End: Complemental strand, 8528992 - 8528886
Alignment:
Q  89 taaaacactttgaagagggtgctgctgtattgttacatcattcatatgattgttttacttactatgagcctaataaatattgtgtcaagttttttcgaat 188  Q
    |||||||||||||||| ||||||||  |||||| | ||||||| |   |||||||||| ||||| || ||| | |||||| |  ||||  ||||||||||    
T  8528992 taaaacactttgaagaaggtgctgccatattgtcatatcattcctccaattgttttacctactacgaacctgaaaaatatgggttcaaagtttttcgaat 8528893  T
Q  189 tcatggg 195  Q
    |||||||    
T  8528892 tcatggg 8528886  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 131
Target Start/End: Complemental strand, 8636917 - 8636871
Alignment:
Q  85 ccggtaaaacactttgaagagggtgctgctgtattgttacatcattc 131  Q
    ||||||||||||||||||||||| |||||  |||||||| |||||||    
T  8636917 ccggtaaaacactttgaagagggggctgccatattgttatatcattc 8636871  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 8641517 - 8641475
Alignment:
Q  1 tatggcattggagaatcatggactaaggtttaccagattgata 43  Q
    |||||||||||||||||||||||||||| |||| | |||||||    
T  8641517 tatggcattggagaatcatggactaaggcttacaacattgata 8641475  T

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Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 195
Target Start/End: Original strand, 9074780 - 9074886
Alignment:
Q  89 taaaacactttgaagagggtgctgctgtattgttacatcattcatatgattgttttacttactatgagcctaataaatattgtgtcaagttttttcgaat 188  Q
    |||||||||||||||| ||||||||  |||||||| ||||||  ||  |||||||||  | |||||| ||| | |||||| |  ||||  ||||||||||    
T  9074780 taaaacactttgaagaaggtgctgccatattgttatatcattgctacaattgttttatcttctatgaacctgagaaatatggattcaaagtttttcgaat 9074879  T
Q  189 tcatggg 195  Q
    |||||||    
T  9074880 tcatggg 9074886  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 2856850 - 2856895
Alignment:
Q  1 tatggcattggagaatcatggactaaggtttaccagattgatactt 46  Q
    |||||||||||||||||||||||||  |||||| | ||||||||||    
T  2856850 tatggcattggagaatcatggactattgtttacaacattgatactt 2856895  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 2874460 - 2874505
Alignment:
Q  1 tatggcattggagaatcatggactaaggtttaccagattgatactt 46  Q
    |||||||||||||||||||||||||  |||||| | ||||||||||    
T  2874460 tatggcattggagaatcatggactattgtttacaacattgatactt 2874505  T

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Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 9074683 - 9074740
Alignment:
Q  1 tatggcattggagaatcatggactaaggtttaccagattgatactttgtacaatcctt 58  Q
    ||||| |||| ||||||||||||||| |||||| | |||||||||| || ||||||||    
T  9074683 tatggtattgaagaatcatggactaaagtttacaacattgatacttcgttcaatcctt 9074740  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 1600258 - 1600290
Alignment:
Q  1 tatggcattggagaatcatggactaaggtttac 33  Q
    |||||||||| ||||||||||||||||||||||    
T  1600258 tatggcattgaagaatcatggactaaggtttac 1600290  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 9443250 - 9443192
Alignment:
Q  1 tatggcattggagaatcatggactaaggtttaccagattgatactttgtacaatccttt 59  Q
    ||||||||||||||||||||||||||| ||||| | || ||||||| || |||||||||    
T  9443250 tatggcattggagaatcatggactaagatttacaacatcgatacttcgttcaatccttt 9443192  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 195
Target Start/End: Complemental strand, 9443153 - 9443047
Alignment:
Q  89 taaaacactttgaagagggtgctgctgtattgttacatcattcatatgattgttttacttactatgagcctaataaatattgtgtcaagttttttcgaat 188  Q
    |||||||||||||||| ||||||||  |||||| | ||||||| |   |||||||||| ||||| || ||| | |||||| |  ||||  ||||||||||    
T  9443153 taaaacactttgaagaaggtgctgccatattgtcatatcattccttcaattgttttacctactacgaacctgaaaaatatgggttcaaagtttttcgaat 9443054  T
Q  189 tcatggg 195  Q
    |||||||    
T  9443053 tcatggg 9443047  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 131
Target Start/End: Complemental strand, 5130857 - 5130811
Alignment:
Q  85 ccggtaaaacactttgaagagggtgctgctgtattgttacatcattc 131  Q
    |||||||||||||||||||||||||||||  ||||| || |||||||    
T  5130857 ccggtaaaacactttgaagagggtgctgccatattgctatatcattc 5130811  T

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