View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10371_low_25 (Length: 249)
Name: NF10371_low_25
Description: NF10371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10371_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 30286619 - 30286382
Alignment:
| Q |
1 |
ccttaacatgtgataaaactatctcttattaaactcttgtttttctatctttggtcatcaaacacgtaactatgaaaccctacttgannnnnnnnnnnnn |
100 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30286619 |
ccttaacatgtgataaaactacctcttattaaactcttgtttttctatctttggtcatcaaacacgtaactatgaaaccctacttgaatttttattttta |
30286520 |
T |
|
| Q |
101 |
nnnnnnnnnnngttgttaacaattgattgaatgatcccttnnnnnnnncaattgattgaatgatattgtgnnnnnnnnnatgacttcacatgttgtgttt |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
30286519 |
tttttatttatgttgttaacaattgattgaatgatcccttaaaaaaaacaattgattgaatgatattgtgtttttttttatgacttcacatgttgtgttt |
30286420 |
T |
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| Q |
201 |
ataattattnnnnnnnnncattgtgtttataaattcat |
238 |
Q |
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||||||||| |||||||||||||||||||| |
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| T |
30286419 |
ataattattaaaaaaaaacattgtgtttataaattcat |
30286382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 30265568 - 30265654
Alignment:
| Q |
1 |
ccttaacatgtgataaaactatctcttattaaactcttgtttttctatctttggtcatcaaacacgtaactatgaaaccctacttga |
87 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30265568 |
ccttaacatgtgataaaactacctcttattaaactcttgtttttctatctttggtcatcaaacacgtaactatgaaaccctacttga |
30265654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 30279727 - 30279641
Alignment:
| Q |
1 |
ccttaacatgtgataaaactatctcttattaaactcttgtttttctatctttggtcatcaaacacgtaactatgaaaccctacttga |
87 |
Q |
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| T |
30279727 |
ccttaacatgtgataaaactacctcttattaaactcttgtttttctatctttggtcatcaaacacgtaactatgaaaccctacttga |
30279641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 112 - 209
Target Start/End: Original strand, 30265679 - 30265776
Alignment:
| Q |
112 |
gttgttaacaattgattgaatgatcccttnnnnnnnncaattgattgaatgatattgtgnnnnnnnnnatgacttcacatgttgtgtttataattatt |
209 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
30265679 |
gttgttaacaattgattgaatgatcccttaaaaaaaacaattgattgaatgatattgtgtttttttttatgacttcacatgttgtgtttataattatt |
30265776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 112 - 209
Target Start/End: Complemental strand, 30279616 - 30279519
Alignment:
| Q |
112 |
gttgttaacaattgattgaatgatcccttnnnnnnnncaattgattgaatgatattgtgnnnnnnnnnatgacttcacatgttgtgtttataattatt |
209 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
30279616 |
gttgttaacaattgattgaatgatcccttaaaaaaaacaattgattgaatgatattgtgtttttttttatgacttcacatgttgtgtttataattatt |
30279519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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