View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10371_low_26 (Length: 247)
Name: NF10371_low_26
Description: NF10371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10371_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 43228223 - 43227998
Alignment:
| Q |
1 |
agagacaaatcagaacccagggaggaaaaaacgccaccaggtagaagctgcagtgcaaaaacactgctgctgcactacattagtccacatgccgaaagcc |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43228223 |
agagacaaatcagaacgcagggaggaaaaaacgccaccaggtagaagctgcagtgcaaaaacactgctgctgcactacattagtccacatgccgaaagcc |
43228124 |
T |
|
| Q |
101 |
aactctaaattatgcagaaaatcaccctgatctcactccaaattatgcagaaaattaccttgaaccaactctgaatagttaagcacaaacatctggatat |
200 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43228123 |
aactctaaattatgcagaaaatcaccccgatctcactccaaattatgcagaaaattaccttgaaccaactctgaatagttaagcacaaacatctggatat |
43228024 |
T |
|
| Q |
201 |
gaaaataaagaaacacatattccata |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
43228023 |
gaaaataaagaaacacatattccata |
43227998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 150 - 222
Target Start/End: Complemental strand, 14839141 - 14839069
Alignment:
| Q |
150 |
gaaaattaccttgaaccaactctgaatagttaagcacaaacatctggatatgaaaataaagaaacacatattc |
222 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
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|
| T |
14839141 |
gaaaattaccttgaaccagctctgaatagttaagcacaaacatctgaatatgaaaataaagaaacaaatattc |
14839069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 93 - 209
Target Start/End: Original strand, 38853602 - 38853717
Alignment:
| Q |
93 |
cgaaagccaactctaaattatgcagaaaatcaccctgatctcactccaaattatgcagaaaattaccttgaaccaactctgaatagttaagcacaaacat |
192 |
Q |
| |
|
||||| ||| |||||||||||| ||||||| ||| ||| ||| | |||| || ||||||||||||||||||||| |||| |||||||||||| ||||||| |
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|
| T |
38853602 |
cgaaatccagctctaaattatgaagaaaattaccttgaactctcgccaa-ttctgcagaaaattaccttgaacccactccgaatagttaagcgcaaacat |
38853700 |
T |
|
| Q |
193 |
ctggatatgaaaataaa |
209 |
Q |
| |
|
||| |||| ||| |||| |
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|
| T |
38853701 |
ctgaatataaaattaaa |
38853717 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 14839257 - 14839144
Alignment:
| Q |
1 |
agagacaaatcagaacccagggaggaaaaaacgccaccaggtagaagctgcagtgcaaaaacactgctgctgcactacattagtccacatgccgaaagcc |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||| || | | |||| || |||||| | ||||||| || |||||| |||||||||||| |||| |||| || |
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|
| T |
14839257 |
agagacaaatcagaacgtagggaggaaaaaactccgctacgtagcaggtgcagtaccaaaacaccgcggctgcattacattagtccatatgctgaaaacc |
14839158 |
T |
|
| Q |
101 |
aactctaaattatg |
114 |
Q |
| |
|
| ||||||| |||| |
|
|
| T |
14839157 |
agctctaaactatg |
14839144 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 3 - 218
Target Start/End: Original strand, 49233813 - 49234026
Alignment:
| Q |
3 |
agacaaatcagaacccagggaggaaaaaacgccaccaggtagaagctgcagtgcaaaaacactgctgctgcactacattagtccacatgccgaaagccaa |
102 |
Q |
| |
|
|||||||||| ||| ||||||||||| || ||||| | |||| ||||| ||| | |||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
49233813 |
agacaaatcaaaacacagggaggaaagaatgccactatgtagcagctgtagtaccaaaacactgctgctgcactacattagtccacatgccgaaaaccag |
49233912 |
T |
|
| Q |
103 |
ctctaaattatgcagaaaatcaccctgatctcactccaaattatgcagaaaattaccttgaaccaactctgaatagttaagcacaaacatctggatatga |
202 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||| |
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|
| T |
49233913 |
ctctaaattatgcagaaaatcacctcgatctcgctccaaattatgcagaaaattaccttgaaccagctctgaatagttaagcac--acatatggatatga |
49234010 |
T |
|
| Q |
203 |
aaataaagaaacacat |
218 |
Q |
| |
|
||| ||||||| |||| |
|
|
| T |
49234011 |
aaaaaaagaaagacat |
49234026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 3 - 214
Target Start/End: Original strand, 49234384 - 49234594
Alignment:
| Q |
3 |
agacaaatcagaacccagggaggaaaaaacgccaccaggtagaagctgcagtgcaaaaacactgctgctgcactacattagtccacatgccgaaagccaa |
102 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||| | |||| ||||||||| | ||||||||||||||||| |||||||| |||||||| |||| ||| |
|
|
| T |
49234384 |
agacaaatcagaacacagggaggaaaaaatgccactatgtagcagctgcagtaccaaaacactgctgctgcattacattagcccacatgcagaaaaccag |
49234483 |
T |
|
| Q |
103 |
ctctaaattatgc-agaaaatcaccctgatctcactccaaattatgcagaaaattaccttgaaccaactctgaatagttaagcacaaacatctggatatg |
201 |
Q |
| |
|
||||||||||||| ||||||||||| |||||| |||||||||||||| ||||||||||||||||| ||||||||| |||||||| ||||||||||||| |
|
|
| T |
49234484 |
ctctaaattatgcaagaaaatcacctcgatctcgctccaaattatgcataaaattaccttgaaccagctctgaataattaagcac--acatctggatatg |
49234581 |
T |
|
| Q |
202 |
aaaataaagaaac |
214 |
Q |
| |
|
||||||||||||| |
|
|
| T |
49234582 |
aaaataaagaaac |
49234594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 24455987 - 24455772
Alignment:
| Q |
1 |
agagacaaatcagaacccagggaggaaaaaacgccaccaggtagaagctgcagtgcaaaaacactgctgctgcactacattagtccacatgccgaaagcc |
100 |
Q |
| |
|
||||| |||||||||| ||||||||||||| |||| | |||| ||||||| | | |||||||||||| |||| |||||||||||||||||||||| || |
|
|
| T |
24455987 |
agagaaaaatcagaacatagggaggaaaaaataccactacgtagcagctgcaataccaaaacactgctgttgcattacattagtccacatgccgaaaacc |
24455888 |
T |
|
| Q |
101 |
aactctaaattatgcagaaaatcaccctgatctcactccaaattatgcagaaaattaccttgaaccaactctgaatagttaagcacaaacatctggatat |
200 |
Q |
| |
|
| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||| |
|
|
| T |
24455887 |
agctctaaattatgcagaaaatcacctcgatctcgctccaaattatgcagaaaattaccttgaaccagctctgaatagttaagcac--acatctgtatat |
24455790 |
T |
|
| Q |
201 |
gaaaataaagaaacacat |
218 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
24455789 |
gaaaataaagaaacacat |
24455772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 1615106 - 1615254
Alignment:
| Q |
1 |
agagacaaatcagaacccagggaggaaaaaacgccaccaggtagaagctgcagtgcaaaaacactgctgctgcactacattagtccacatgccgaaagcc |
100 |
Q |
| |
|
||||| |||||||||| | |||| ||||||| ||||| | ||| ||||||| | | |||||||||||||||||||||||||||||||||| |||| || |
|
|
| T |
1615106 |
agagaaaaatcagaacacggggaagaaaaaatgccactacatagcagctgcaataccaaaacactgctgctgcactacattagtccacatgtagaaaacc |
1615205 |
T |
|
| Q |
101 |
aactctaaattatgcagaaaatcaccctgatctcactccaaattatgca |
149 |
Q |
| |
|
| |||||||||||||||||||||||| |||||| ||||||| |||||| |
|
|
| T |
1615206 |
agctctaaattatgcagaaaatcacctcgatctctctccaaactatgca |
1615254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 2e-57; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 3 - 218
Target Start/End: Complemental strand, 50862664 - 50862451
Alignment:
| Q |
3 |
agacaaatcagaacccagggaggaaaaaacgccaccaggtagaagctgcagtgcaaaaacactgctgctgcactacattagtccacatgccgaaagccaa |
102 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| | ||| ||||||||| | ||| || ||||| | ||||||||||||||||||||||||| || |
|
|
| T |
50862664 |
agacaaatcagaacacagggaggaaaaaacgccactatgtaccagctgcagtaccaaagcagtgctgatacactacattagtccacatgccgaaaatcag |
50862565 |
T |
|
| Q |
103 |
ctctaaattatgcagaaaatcaccctgatctcactccaaattatgcagaaaattaccttgaaccaactctgaatagttaagcacaaacatctggatatga |
202 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||| |||||||||| ||||||| |||| ||||||||| |
|
|
| T |
50862564 |
ctctaaattatgcagaaaatcacctcgatctcgctccaaattatgcagaaaactaccttgaaccagctctgaatagataagcac--acatttggatatga |
50862467 |
T |
|
| Q |
203 |
aaataaagaaacacat |
218 |
Q |
| |
|
|||| |||||| |||| |
|
|
| T |
50862466 |
aaatgaagaaaaacat |
50862451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 84 - 206
Target Start/End: Complemental strand, 25433637 - 25433516
Alignment:
| Q |
84 |
tccacatgccgaaagccaactctaaattatgcagaaaatcaccctgatctcactccaaattatgcagaaaattaccttgaaccaactctgaatagttaag |
183 |
Q |
| |
|
|||||||| | ||| ||| ||| |||||||| ||||||| ||| ||| ||| |||| | || |||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
25433637 |
tccacatgtcaaaatccagctccaaattatgaagaaaattaccttgaactctctccga-ttctgcaaaaaattaccttgaaccaactccgaatagttaag |
25433539 |
T |
|
| Q |
184 |
cacaaacatctggatatgaaaat |
206 |
Q |
| |
|
| |||||||||| |||||||||| |
|
|
| T |
25433538 |
cgcaaacatctgaatatgaaaat |
25433516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 103 - 153
Target Start/End: Complemental strand, 47724030 - 47723980
Alignment:
| Q |
103 |
ctctaaattatgcagaaaatcaccctgatctcactccaaattatgcagaaa |
153 |
Q |
| |
|
|||||||| ||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
47724030 |
ctctaaatgatgcagaaaatcacctcgatctcgctccaaattatgcagaaa |
47723980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 103 - 153
Target Start/End: Complemental strand, 47731022 - 47730972
Alignment:
| Q |
103 |
ctctaaattatgcagaaaatcaccctgatctcactccaaattatgcagaaa |
153 |
Q |
| |
|
|||||||| ||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
47731022 |
ctctaaatgatgcagaaaatcacctcgatctcgctccaaattatgcagaaa |
47730972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 150 - 222
Target Start/End: Original strand, 27962549 - 27962621
Alignment:
| Q |
150 |
gaaaattaccttgaaccaactctgaatagttaagcacaaacatctggatatgaaaataaagaaacacatattc |
222 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
27962549 |
gaaaattaccttgaaccagctctgaatagttaagcacaaacatctgaatatgaaaataaagaaacaaatattc |
27962621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 27962433 - 27962546
Alignment:
| Q |
1 |
agagacaaatcagaacccagggaggaaaaaacgccaccaggtagaagctgcagtgcaaaaacactgctgctgcactacattagtccacatgccgaaagcc |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||| || | | |||| || |||||| | ||||||| || |||||| |||||||||||| |||| |||| || |
|
|
| T |
27962433 |
agagacaaatcagaacgtagggaggaaaaaactccgctacgtagcaggtgcagtaccaaaacaccgcggctgcattacattagtccatatgctgaaaacc |
27962532 |
T |
|
| Q |
101 |
aactctaaattatg |
114 |
Q |
| |
|
| ||||||| |||| |
|
|
| T |
27962533 |
agctctaaactatg |
27962546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 176
Target Start/End: Complemental strand, 1480594 - 1480554
Alignment:
| Q |
136 |
ctccaaattatgcagaaaattaccttgaaccaactctgaat |
176 |
Q |
| |
|
|||||||||| ||| ||||| |||||||||||||||||||| |
|
|
| T |
1480594 |
ctccaaattaagcataaaatcaccttgaaccaactctgaat |
1480554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 176
Target Start/End: Complemental strand, 19180398 - 19180358
Alignment:
| Q |
136 |
ctccaaattatgcagaaaattaccttgaaccaactctgaat |
176 |
Q |
| |
|
|||||||||| ||| ||||| |||||||||||||||||||| |
|
|
| T |
19180398 |
ctccaaattaagcataaaatcaccttgaaccaactctgaat |
19180358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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