View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10371_low_28 (Length: 243)

Name: NF10371_low_28
Description: NF10371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10371_low_28
NF10371_low_28
[»] chr5 (1 HSPs)
chr5 (10-243)||(24317392-24317625)
[»] chr2 (4 HSPs)
chr2 (10-127)||(24488585-24488702)
chr2 (10-123)||(17694393-17694506)
chr2 (10-101)||(34604903-34604994)
chr2 (10-96)||(15474206-15474292)
[»] chr6 (1 HSPs)
chr6 (10-98)||(10916791-10916879)
[»] chr7 (1 HSPs)
chr7 (10-100)||(9415738-9415828)
[»] chr3 (1 HSPs)
chr3 (13-112)||(23909561-23909660)
[»] scaffold0294 (1 HSPs)
scaffold0294 (10-104)||(18806-18900)
[»] chr4 (2 HSPs)
chr4 (13-127)||(28001977-28002091)
chr4 (10-97)||(25106109-25106195)
[»] chr8 (4 HSPs)
chr8 (10-92)||(30876336-30876418)
chr8 (10-97)||(18540736-18540822)
chr8 (46-100)||(12538990-12539044)
chr8 (10-88)||(23520857-23520935)


Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 10 - 243
Target Start/End: Original strand, 24317392 - 24317625
Alignment:
Q  10 aagaagtgtcatacataactcaaggctaaggtctaggtataaatagtggttaggtagggcttggatggaaaaccttatcctgacaatcgtacttgcaggt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24317392 aagaagtgtcatacataactcaaggctaaggtctaggtataaatagtggttaggtagggcttggatggaaaaccttatcctgacaatcgtacttgcaggt 24317491  T
Q  110 acaaacatgggtaaccctcagccttaggtgagtcaccttcggcctgggtcggcgtgttcaacccccggacctcgtgagtaaccatcggtctgcatgggct 209  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||    
T  24317492 acaaacatgggtaaccctcagccttaggtgagtcgccttcggcctgggtcggtgtgttcaacccccggacctcgtgagtaacaatcggtttgcatgggct 24317591  T
Q  210 ataagctgagggagtcacctttaggtttaatttt 243  Q
    ||||||||||||||||||||||||||||||||||    
T  24317592 ataagctgagggagtcacctttaggtttaatttt 24317625  T

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Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 127
Target Start/End: Complemental strand, 24488702 - 24488585
Alignment:
Q  10 aagaagtgtcatacataactcaaggctaaggtctaggtataaatagtggttaggtagggcttggatggaaaaccttatcctgacaatcgtacttgcaggt 109  Q
    |||||||||||||||| || ||||||||||||| ||||||||||||||| |||||||| ||||| || ||||| ||||||||||||||| || | | |||    
T  24488702 aagaagtgtcatacatgacccaaggctaaggtccaggtataaatagtggataggtaggacttggctgaaaaacgttatcctgacaatcgcacctactggt 24488603  T
Q  110 acaaacatgggtaaccct 127  Q
    ||  ||||||||| ||||    
T  24488602 acggacatgggtagccct 24488585  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 123
Target Start/End: Original strand, 17694393 - 17694506
Alignment:
Q  10 aagaagtgtcatacataactcaaggctaaggtctaggtataaatagtggttaggtagggcttggatggaaaaccttatcctgacaatcgtacttgcaggt 109  Q
    |||||||||||||| |  | ||||||||| |  |||||||||| || || || |||||| |||  |||||||||||||| |||||||||||||||  |||    
T  17694393 aagaagtgtcatacctgtcccaaggctaaagcgtaggtataaagaggggctaagtagggtttgactggaaaaccttatcttgacaatcgtacttgttggt 17694492  T
Q  110 acaaacatgggtaa 123  Q
    | | ||||||||||    
T  17694493 atagacatgggtaa 17694506  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 101
Target Start/End: Original strand, 34604903 - 34604994
Alignment:
Q  10 aagaagtgtcatacataactcaaggctaaggtctaggtataaatagtggttaggtagggcttggatggaaaaccttatcctgacaatcgtac 101  Q
    |||||||||||||  | || ||||||||||| ||| ||||| |||||||||||  |  |||||| ||| |||||||||| ||||||| ||||    
T  34604903 aagaagtgtcatatttgacccaaggctaaggcctatgtatatatagtggttagtcaaagcttggttggcaaaccttatcttgacaattgtac 34604994  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 15474292 - 15474206
Alignment:
Q  10 aagaagtgtcatacataactcaaggctaaggtctaggtataaatagtggttaggtagggcttggatggaaaaccttatcctgacaat 96  Q
    |||||||| |||||||| | |||||||||  | | ||||||||||  ||||||||| |  |||| |||||||||||||| |||||||    
T  15474292 aagaagtgccatacatatcccaaggctaaaatatgggtataaataagggttaggtatgtattgggtggaaaaccttatcgtgacaat 15474206  T

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Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 10916879 - 10916791
Alignment:
Q  10 aagaagtgtcatacataactcaaggctaaggtctaggtataaatagtggttaggtagggcttggatggaaaaccttatcctgacaatcg 98  Q
    |||||||||||||| | |||||||| ||||   | ||||||||||||||||||||||||||||| ||  ||||||||||||||||||||    
T  10916879 aagaagtgtcatacgtgactcaaggttaagacatgggtataaatagtggttaggtagggcttggctgacaaaccttatcctgacaatcg 10916791  T

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Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 100
Target Start/End: Original strand, 9415738 - 9415828
Alignment:
Q  10 aagaagtgtcatacataactcaaggctaaggtctaggtataaatagtggttaggtagggcttggatggaaaaccttatcctgacaatcgta 100  Q
    ||||||| |||||| | | |||||||||| |  | ||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||    
T  9415738 aagaagtatcatacctgagtcaaggctaatgcatgggtataaatagtggttaggtagggcttggctggcaaaccttatcctaacaatcgta 9415828  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 23909660 - 23909561
Alignment:
Q  13 aagtgtcatacataactcaaggctaaggtctaggtataaatagtggttaggtagggcttggatggaaaaccttatcctgacaatcgtacttgcaggtaca 112  Q
    ||||||||||||| |  ||||| ||| |||  ||||||||||||||||||||||||||||| |   |||||||||||| |||||||||| | ||||||||    
T  23909660 aagtgtcatacatgatccaaggttaatgtccgggtataaatagtggttaggtagggcttggctaacaaaccttatcctaacaatcgtaccttcaggtaca 23909561  T

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Target: scaffold0294 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 104
Target Start/End: Original strand, 18806 - 18900
Alignment:
Q  10 aagaagtgtcatacataactcaaggctaaggtctaggtataaatagtggttaggtagggcttggatggaaaaccttatcctgacaatcgtacttg 104  Q
    |||||||||||||| | || ||||||||||| ||    ||| |||| ||||||||||||||||  ||| ||||||||||||||||||||||||||    
T  18806 aagaagtgtcataccttacccaaggctaaggcctcaacatatataggggttaggtagggcttgactggcaaaccttatcctgacaatcgtacttg 18900  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 127
Target Start/End: Complemental strand, 28002091 - 28001977
Alignment:
Q  13 aagtgtcatacataactcaaggctaaggtctaggtataaatagtggttaggtagggcttggatggaaaaccttatcctgacaatcgtacttgcaggtaca 112  Q
    ||||||||||  | || |||||||| ||| |||||||| | |  ||||||||||||||||| ||| |||||||||||||| |||||||| ||  |||||     
T  28002091 aagtgtcatatcttacccaaggctagggtttaggtatatacatgggttaggtagggcttggctggcaaaccttatcctgaaaatcgtacatgttggtacg 28001992  T
Q  113 aacatgggtaaccct 127  Q
     ||||||||||||||    
T  28001991 gacatgggtaaccct 28001977  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 97
Target Start/End: Complemental strand, 25106195 - 25106109
Alignment:
Q  10 aagaagtgtcatacataactcaaggctaaggtctaggtataaatagtggttaggtagggcttggatggaaaaccttatcctgacaatc 97  Q
    ||||||||| |||| |||| ||||||||| || | |||||||||||| |||||||||||||||| || ||||| ||||| | ||||||    
T  25106195 aagaagtgttatacgtaacccaaggctaatgttt-ggtataaatagttgttaggtagggcttggttgaaaaacattatcataacaatc 25106109  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 92
Target Start/End: Complemental strand, 30876418 - 30876336
Alignment:
Q  10 aagaagtgtcatacataactcaaggctaaggtctaggtataaatagtggttaggtagggcttggatggaaaaccttatcctga 92  Q
    |||||||||||  | |||| ||||||||| | |||||||||||||||||| |||||||| |||   |||||||||||| ||||    
T  30876418 aagaagtgtcaagcctaacccaaggctaatgcctaggtataaatagtggtaaggtagggtttgagcggaaaaccttattctga 30876336  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 97
Target Start/End: Original strand, 18540736 - 18540822
Alignment:
Q  10 aagaagtgtcatacataactcaaggctaaggtctaggtataaatagtggttaggtagggcttggatggaaaaccttatcctgacaatc 97  Q
    |||||||||||||| |  | ||||||||||| || |||||| ||||  |||||||||||||||   || |||||||||||||||||||    
T  18540736 aagaagtgtcatacttgtcccaaggctaagg-ctgggtatatataggagttaggtagggcttgaccggcaaaccttatcctgacaatc 18540822  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 100
Target Start/End: Complemental strand, 12539044 - 12538990
Alignment:
Q  46 gtataaatagtggttaggtagggcttggatggaaaaccttatcctgacaatcgta 100  Q
    |||||||||||||||||||||||||||| | | ||||| |||| ||| |||||||    
T  12539044 gtataaatagtggttaggtagggcttggctagcaaaccatatcatgaaaatcgta 12538990  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 88
Target Start/End: Original strand, 23520857 - 23520935
Alignment:
Q  10 aagaagtgtcatacataactcaaggctaaggtctaggtataaatagtggttaggtagggcttggatggaaaaccttatc 88  Q
    |||||||||||||| |  | ||| ||||||| || |||||| ||||   ||||||||||||||| ||||||||||||||    
T  23520857 aagaagtgtcatacttgtcccaaagctaaggcctgggtatatataggaattaggtagggcttggctggaaaaccttatc 23520935  T

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