View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10371_low_3 (Length: 450)
Name: NF10371_low_3
Description: NF10371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10371_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 217
Target Start/End: Complemental strand, 29041361 - 29041160
Alignment:
| Q |
16 |
catataccatccattgaacatgccacattttcagtacaaacctcaatagcttctgcaggtatttttggttcaaatcttatgagatttgcatattcagtca |
115 |
Q |
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| T |
29041361 |
catataccatccattgaacatgccacattttcagtacaaacctcaatagcttctgcaggtatttttggttcaaatcttatgagatttgcatattcagtca |
29041262 |
T |
|
| Q |
116 |
atagatgtaacatataatcatacaccaatttcatatttacgttctcttcaacgaaccttgtaccttctctgccaatctcttgtgcctgttgaattatgca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29041261 |
atagatgtaacatataatcatacaccaatttcatatttacgttctcttcaacgaaccttgtaccttctctgccaatctcttgtgcctgttgaattatgca |
29041162 |
T |
|
| Q |
216 |
tt |
217 |
Q |
| |
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|| |
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| T |
29041161 |
tt |
29041160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 233 - 445
Target Start/End: Complemental strand, 29019164 - 29018952
Alignment:
| Q |
233 |
caaagaaatggagaattgcgagttcgaactcacgtcacaacatatcaaatttctctccaatcttttatcatttgagctttacttatagacatatattgac |
332 |
Q |
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||||||||| ||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
29019164 |
caaagaaatagagaattgcgaattcgaacttacgtcacaacatatcaaatgtctctccaatcttttatcatttgaactttacttatagacatgtattgac |
29019065 |
T |
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| Q |
333 |
attttatatgagaaaatattatagtattaggggaaggaatatagggattaccttccctggatgagtattgccccaatctacagcatacttaatatcttga |
432 |
Q |
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| T |
29019064 |
attttatatgagaaaatattatagtattaggggaaggaatatagggattaccttccctggatgagtattgccccaatcaacagcatacttaatatcttga |
29018965 |
T |
|
| Q |
433 |
cacaggttctgct |
445 |
Q |
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|||| ||| |||| |
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| T |
29018964 |
cacatgttttgct |
29018952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 16 - 213
Target Start/End: Complemental strand, 29019668 - 29019471
Alignment:
| Q |
16 |
catataccatccattgaacatgccacattttcagtacaaacctcaatagcttctgcaggtatttttggttcaaatcttatgagatttgcatattcagtca |
115 |
Q |
| |
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||||||||| |||||| |||||||| ||||||| ||||||||||| ||| |||||||||| ||| ||||||||| ||||| |||||||||||||||| |
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| T |
29019668 |
catataccacccattggacatgccaagttttcagaacaaacctcaactgctcctgcaggtatggttgcttcaaatctcatgagctttgcatattcagtca |
29019569 |
T |
|
| Q |
116 |
atagatgtaacatataatcatacaccaatttcatatttacgttctcttcaacgaaccttgtaccttctctgccaatctcttgtgcctgttgaattatg |
213 |
Q |
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| T |
29019568 |
atagatgtaacatataatcatacaccaatttcatatttacgttctcttctatgaatcttgtcccttctctgccaatctcttctgcctgttgaattatg |
29019471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 253 - 445
Target Start/End: Complemental strand, 29040505 - 29040311
Alignment:
| Q |
253 |
agttcgaactcacgtcacaacatatcaaatttctctccaatcttttatcatttgagctttacttat-agacatatattgacattttatatgagaaaatat |
351 |
Q |
| |
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||||| |||||| ||| || ||||||||| | | |||||||||||||| ||||| || ||||| | || |||||||||| |||||||| || || || |
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| T |
29040505 |
agttcaaactcaagtcccagaatatcaaatgtttatccaatcttttatcgtttgaactatacttctgaggcatatattgagattttataacagcaattac |
29040406 |
T |
|
| Q |
352 |
tatagtattaggggaa-ggaatatagggattaccttccctggatgagtattgccccaatctacagcatacttaatatcttgacacaggttctgct |
445 |
Q |
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|||||||||| ||||| |||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||| ||| |||| |
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| T |
29040405 |
tatagtattacgggaaaggaatatagggattaccttctctggatgtgtattgccccaatcaacagcatacttaatatcttgacacatgttttgct |
29040311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 319
Target Start/End: Complemental strand, 26919928 - 26919846
Alignment:
| Q |
238 |
aaatggagaattgcgagttcgaactcacgtcacaacatatcaaatttctctccaa-tcttttatcatttgagctttacttata |
319 |
Q |
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|
||||||||||||| |||||| |||||||| ||||||||||||| ||| | ||| | |||||||||||||| | |||||||| |
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| T |
26919928 |
aaatggagaattgtgagttcatcctcacgtcccaacatatcaaatatctttacaatttttttatcatttgagttatacttata |
26919846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 317
Target Start/End: Original strand, 39992176 - 39992223
Alignment:
| Q |
270 |
caacatatcaaatttctctccaatcttttatcatttgagctttactta |
317 |
Q |
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||||||||||||||||||| |||| ||||||||||||| |||||||| |
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| T |
39992176 |
caacatatcaaatttctctgcaattctttatcatttgagttttactta |
39992223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 308
Target Start/End: Complemental strand, 15091360 - 15091290
Alignment:
| Q |
238 |
aaatggagaattgcgagttcgaactcacgtcacaacatatcaaatttctctccaatcttttatcatttgag |
308 |
Q |
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||||||||||||| |||||| |||||||| | ||||||||||||| ||| | |||| ||||| ||| |||| |
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| T |
15091360 |
aaatggagaattgtgagttcaaactcacgccccaacatatcaaatgtctttgcaatattttaccatctgag |
15091290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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