View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10371_low_32 (Length: 240)
Name: NF10371_low_32
Description: NF10371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10371_low_32 |
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| [»] scaffold0552 (1 HSPs) |
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Alignment Details
Target: scaffold0552 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: scaffold0552
Description:
Target: scaffold0552; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 9441 - 9666
Alignment:
| Q |
1 |
tcttcgttcaaaagctggaaccgctcttttcggggttgaggagaggttgcaatatgagtcagaactcgatgcaatagttggatactgcaagcttgctata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9441 |
tcttcgttcaaaagctggaaccgctcttttcggggttgaggagaggttgcaatatgagtcagaactcgatgcaatagttggatactgcaagcttgctata |
9540 |
T |
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| Q |
101 |
gtcgttttttcaagtaattataacaaatcaatatcgtgtgttcaagaattggagaaaataactgaatgttgtcgaacctcagacttggttgtttttcctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9541 |
gtcgttttttcaagtaattataacaaatcaatatcgtgtgttcaagaattggagaaaataactgaatgttgtcgaacctcagacttggttgtttttcctg |
9640 |
T |
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| Q |
201 |
tgttctttgatggtgtctatcccttg |
226 |
Q |
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| T |
9641 |
tgttctttgatggtgtctatcccttg |
9666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 226; Significance: 1e-125; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 6829940 - 6830165
Alignment:
| Q |
1 |
tcttcgttcaaaagctggaaccgctcttttcggggttgaggagaggttgcaatatgagtcagaactcgatgcaatagttggatactgcaagcttgctata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6829940 |
tcttcgttcaaaagctggaaccgctcttttcggggttgaggagaggttgcaatatgagtcagaactcgatgcaatagttggatactgcaagcttgctata |
6830039 |
T |
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| Q |
101 |
gtcgttttttcaagtaattataacaaatcaatatcgtgtgttcaagaattggagaaaataactgaatgttgtcgaacctcagacttggttgtttttcctg |
200 |
Q |
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| T |
6830040 |
gtcgttttttcaagtaattataacaaatcaatatcgtgtgttcaagaattggagaaaataactgaatgttgtcgaacctcagacttggttgtttttcctg |
6830139 |
T |
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| Q |
201 |
tgttctttgatggtgtctatcccttg |
226 |
Q |
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| T |
6830140 |
tgttctttgatggtgtctatcccttg |
6830165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 136 - 218
Target Start/End: Original strand, 6810790 - 6810872
Alignment:
| Q |
136 |
gtgtgttcaagaattggagaaaataactgaatgttgtcgaacctcagacttggttgtttttcctgtgttctttgatggtgtct |
218 |
Q |
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| T |
6810790 |
gtgtcttcaagaattggagaaaataaccgaatgttgccgaacctcggatttgattgctattccagtgttctatgatggtgtct |
6810872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 206
Target Start/End: Complemental strand, 6594056 - 6593984
Alignment:
| Q |
134 |
tcgtgtgttcaagaattggagaaaataactgaatgttgtcgaacctcagacttggttgtttttcctgtgttct |
206 |
Q |
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|||||| | ||||||||||||||||||||| | ||||| ||||||||||| ||||||||| | |||||||||| |
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| T |
6594056 |
tcgtgtatacaagaattggagaaaataactcagtgttgccgaacctcagatttggttgttctgcctgtgttct |
6593984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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