View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10371_low_33 (Length: 240)
Name: NF10371_low_33
Description: NF10371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10371_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 31524000 - 31524222
Alignment:
| Q |
1 |
taggataaatgaacctgacatgcactgatgtaacttcatatataagctctattttaaggacaccaattatattaacatgttaaactaacgtcccttgata |
100 |
Q |
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| T |
31524000 |
taggataaatgaacctgacatgcactgatgtaacttcatatataagctctattttaaggacaccaattatattaacatgttaaactaacgtcccttgata |
31524099 |
T |
|
| Q |
101 |
tatttggcaaagaagcatgcttgtcatatggcaactttatgataaggaatgatttgaaaggtcttgctccctgcattgtgaatacattataatttatttc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
31524100 |
tatttggcaaagaagcatgcttgtcatatggcaactttatgataaggaatgatttgaaaggtcttgccccctgcattgtgaatacattataatttatttc |
31524199 |
T |
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| Q |
201 |
gttctggatgcaaataaggacat |
223 |
Q |
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|||||||||||||||||||||| |
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| T |
31524200 |
attctggatgcaaataaggacat |
31524222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 49193958 - 49194180
Alignment:
| Q |
1 |
taggataaatgaacctgacatgcactgatgtaacttcatatataagctctattttaaggacaccaattatattaacatgttaaactaacgtcccttgata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49193958 |
taggataaatgaacctgacatgcactgatgtaacttcatatataagctctattttaaggacaccaattatattaacatgttaaactaacgtcccttgata |
49194057 |
T |
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| Q |
101 |
tatttggcaaagaagcatgcttgtcatatggcaactttatgataaggaatgatttgaaaggtcttgctccctgcattgtgaatacattataatttatttc |
200 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
49194058 |
tatttggcaaagaagcatgcttgccatatggcaactttatgataaggaatgatttgaaaggtcttgccccctgcattgtgaatacattataatttatttc |
49194157 |
T |
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| Q |
201 |
gttctggatgcaaataaggacat |
223 |
Q |
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|||||||||||||||||||||| |
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| T |
49194158 |
attctggatgcaaataaggacat |
49194180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 33367500 - 33367278
Alignment:
| Q |
1 |
taggataaatgaacctgacatgcactgatgtaacttcatatataagctctattttaaggacaccaattatattaacatgttaaactaacgtcccttgata |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33367500 |
taggataaatgaacctgacatgcactaatgtaacttcatatataagctctattttaaggacaccaattatattaacatgttaaactaacgtcccttgata |
33367401 |
T |
|
| Q |
101 |
tatttggcaaagaagcatgcttgtcatatggcaactttatgataaggaatgatttgaaaggtcttgctccctgcattgtgaatacattataatttatttc |
200 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
33367400 |
tatttggcaaagaagcatgcttgccatatggcaactttatgataaggaatgatttgaaaggtcttgccccctgtattgtgaatacattataatttatttc |
33367301 |
T |
|
| Q |
201 |
gttctggatgcaaataaggacat |
223 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
33367300 |
attctggatgcaaataaggacat |
33367278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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