View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10371_low_34 (Length: 239)

Name: NF10371_low_34
Description: NF10371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10371_low_34
NF10371_low_34
[»] chr2 (4 HSPs)
chr2 (6-223)||(9946024-9946242)
chr2 (3-89)||(37151136-37151222)
chr2 (121-209)||(9945849-9945938)
chr2 (17-89)||(26318694-26318766)
[»] chr3 (1 HSPs)
chr3 (1-89)||(32004174-32004262)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-89)||(336013-336101)
[»] chr7 (2 HSPs)
chr7 (1-89)||(21015173-21015261)
chr7 (17-73)||(21072284-21072340)
[»] chr1 (2 HSPs)
chr1 (1-89)||(45808781-45808869)
chr1 (1-55)||(9555150-9555204)
[»] chr4 (2 HSPs)
chr4 (1-89)||(39755405-39755493)
chr4 (17-89)||(15475999-15476071)
[»] chr8 (2 HSPs)
chr8 (1-89)||(28459522-28459610)
chr8 (20-89)||(8447715-8447784)
[»] chr5 (2 HSPs)
chr5 (1-87)||(477598-477684)
chr5 (20-89)||(15831203-15831272)


Alignment Details
Target: chr2 (Bit Score: 138; Significance: 3e-72; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 6 - 223
Target Start/End: Complemental strand, 9946242 - 9946024
Alignment:
Q  6 tgtaccatttatgcctagacgttttggcacgtcttgtgctttagtgtctaaggttgtataatatatatttcattttggctttttnnnnnnn-tacatgat 104  Q
    |||||||||| ||| ||  |||||||||||| ||||| |||||| ||||| |||||||||||||||||| ||||||||||||||        ||||||||    
T  9946242 tgtaccatttgtgcataagcgttttggcacgccttgtactttagcgtctagggttgtataatatatattccattttggctttttcataaaaatacatgat 9946143  T
Q  105 atactagttattcatccataattactcataaaattctataaaaatacatagttaatacagtaatttgatagaaaaggaagggccgaagtctgtttagaaa 204  Q
    || ||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  9946142 atgctagtaattcatccataattactcataaaattctataaaaatatatagttaatgcagtaatttgatagaaaaggaagggccgaagtctgtttagaaa 9946043  T
Q  205 acattatttttggtgataa 223  Q
    |||||||||||||||||||    
T  9946042 acattatttttggtgataa 9946024  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 89
Target Start/End: Complemental strand, 37151222 - 37151136
Alignment:
Q  3 ttgtgtaccatttatgcctagacgttttggcacgtcttgtgctttagtgtctaaggttgtataatatatatttcattttggcttttt 89  Q
    ||||||||| ||| ||||||| |||||||||||  |||||||||||| | |||  ||||| ||||||||||| |||||| |||||||    
T  37151222 ttgtgtaccttttgtgcctaggcgttttggcactccttgtgctttagcgcctagagttgtttaatatatattccattttagcttttt 37151136  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 209
Target Start/End: Complemental strand, 9945938 - 9945849
Alignment:
Q  121 cataattactcataaaattctataaaaa-tacatagttaatacagtaatttgatagaaaaggaagggccgaagtctgtttagaaaacatt 209  Q
    ||||| |||||| || |||||||||||| || |||||||||||| ||||||||||| ||||||||||  | ||| | |||||||||||||    
T  9945938 cataactactcaaaatattctataaaaaatatatagttaatacattaatttgatagcaaaggaagggttggagtgtatttagaaaacatt 9945849  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 26318694 - 26318766
Alignment:
Q  17 tgcctagacgttttggcacgtcttgtgctttagtgtctaaggttgtataatatatatttcattttggcttttt 89  Q
    ||||||| |||||||||||  ||||| |||||| | |||  ||||| ||||||||||| |||||||| |||||    
T  26318694 tgcctaggcgttttggcactccttgtactttagcgcctagagttgtttaatatatattccattttggtttttt 26318766  T

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Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 32004174 - 32004262
Alignment:
Q  1 ttttgtgtaccatttatgcctagacgttttggcacgtcttgtgctttagtgtctaaggttgtataatatatatttcattttggcttttt 89  Q
    ||||||||||||||| ||||||| |||||||||||| |||||||||||| ||||| | |||| ||||||||||||||||||||||||||    
T  32004174 ttttgtgtaccatttgtgcctaggcgttttggcacgccttgtgctttagcgtctaggtttgtttaatatatatttcattttggcttttt 32004262  T

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Target: scaffold0003 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 336013 - 336101
Alignment:
Q  1 ttttgtgtaccatttatgcctagacgttttggcacgtcttgtgctttagtgtctaaggttgtataatatatatttcattttggcttttt 89  Q
    ||||||||||| ||| ||||||| ||||||||||| ||||||||||||  ||||| | |||| ||||||||||| ||||||||||||||    
T  336013 ttttgtgtaccctttgtgcctaggcgttttggcacatcttgtgctttaacgtctaggtttgtttaatatatattccattttggcttttt 336101  T

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Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 21015261 - 21015173
Alignment:
Q  1 ttttgtgtaccatttatgcctagacgttttggcacgtcttgtgctttagtgtctaaggttgtataatatatatttcattttggcttttt 89  Q
    |||||||||||  || ||||||| |||||||||||| |||||||||||| ||||| | |||| |||||||||||||||||| |||||||    
T  21015261 ttttgtgtacccattgtgcctaggcgttttggcacgccttgtgctttagcgtctaggtttgtttaatatatatttcattttagcttttt 21015173  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 21072284 - 21072340
Alignment:
Q  17 tgcctagacgttttggcacgtcttgtgctttagtgtctaaggttgtataatatatat 73  Q
    ||||||| |||||||||||| |||||||||||| ||||||| |||| ||||||||||    
T  21072284 tgcctaggcgttttggcacgccttgtgctttagcgtctaagtttgtttaatatatat 21072340  T

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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 45808781 - 45808869
Alignment:
Q  1 ttttgtgtaccatttatgcctagacgttttggcacgtcttgtgctttagtgtctaaggttgtataatatatatttcattttggcttttt 89  Q
    |||||||||||  || ||||||| |||||||||| | |||||||||||| ||||||| |||| ||||||||||||||||||| ||||||    
T  45808781 ttttgtgtacccattgtgcctaggcgttttggcatgccttgtgctttagcgtctaagtttgtttaatatatatttcattttgacttttt 45808869  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 9555204 - 9555150
Alignment:
Q  1 ttttgtgtaccatttatgcctagacgttttggcacgtcttgtgctttagtgtcta 55  Q
    |||||||||||| || | ||||| |||||||||||| |||||||||||| |||||    
T  9555204 ttttgtgtaccaattgtacctaggcgttttggcacgccttgtgctttagcgtcta 9555150  T

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Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 39755493 - 39755405
Alignment:
Q  1 ttttgtgtaccatttatgcctagacgttttggcacgtcttgtgctttagtgtctaaggttgtataatatatatttcattttggcttttt 89  Q
    |||||||||||| || ||||||| |||||||||||  ||||||||||||  |||| |||||| ||||||||||| ||||||| ||||||    
T  39755493 ttttgtgtaccaattgtgcctaggcgttttggcactccttgtgctttagcatctagggttgtttaatatatattccattttgccttttt 39755405  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 15475999 - 15476071
Alignment:
Q  17 tgcctagacgttttggcacgtcttgtgctttagtgtctaaggttgtataatatatatttcattttggcttttt 89  Q
    |||||||  ||||||||||  ||||| |||||| | ||| |||||| ||||||||||| ||||||||||||||    
T  15475999 tgcctaggggttttggcaccccttgtactttagcgcctagggttgtttaatatatattccattttggcttttt 15476071  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 28459610 - 28459522
Alignment:
Q  1 ttttgtgtaccatttatgcctagacgttttggcacgtcttgtgctttagtgtctaaggttgtataatatatatttcattttggcttttt 89  Q
    |||||||||||  || |||||||  ||||| |||||||||||||||||| ||||| | |||| ||||||||||| |||||||| |||||    
T  28459610 ttttgtgtacccattgtgcctaggtgtttttgcacgtcttgtgctttagcgtctaggtttgtttaatatatattccattttggtttttt 28459522  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 8447715 - 8447784
Alignment:
Q  20 ctagacgttttggcacgtcttgtgctttagtgtctaaggttgtataatatatatttcattttggcttttt 89  Q
    |||| |||||||||||| |||||||||||| ||||| | |||| |||||||||||  |||||| ||||||    
T  8447715 ctaggcgttttggcacgccttgtgctttagcgtctaggtttgtttaatatatattctattttgacttttt 8447784  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 477684 - 477598
Alignment:
Q  1 ttttgtgtaccatttatgcctagacgttttggcacgtcttgtgctttagtgtctaaggttgtataatatatatttcattttggcttt 87  Q
    |||||||||||  || ||||||| |||||||||||| |||||||||||| ||||| | |||| | ||||||||| ||||||| ||||    
T  477684 ttttgtgtacccattgtgcctaggcgttttggcacgccttgtgctttagcgtctaggtttgtttgatatatattccattttgacttt 477598  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 15831203 - 15831272
Alignment:
Q  20 ctagacgttttggcacgtcttgtgctttagtgtctaaggttgtataatatatatttcattttggcttttt 89  Q
    |||| |||||||||||| |||||||||||| ||||| | || |  |||||||||| ||||||||||||||    
T  15831203 ctaggcgttttggcacgccttgtgctttagcgtctaggtttattcaatatatattccattttggcttttt 15831272  T

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