View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10371_low_36 (Length: 235)
Name: NF10371_low_36
Description: NF10371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10371_low_36 |
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| [»] scaffold0150 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 9e-94; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 21 - 222
Target Start/End: Complemental strand, 52133888 - 52133687
Alignment:
| Q |
21 |
cgctgaagcttccaaagctgtgattgattttctcttaaacttgcttcgcttgccagtcggtacagtagttaaactactgagcaaaaatggcatggttggt |
120 |
Q |
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| T |
52133888 |
cgctgaagcttccaaagctgtgatagattttctctttaacttgcttcgcttgcctgtcggtacagtagttaaactactgaccaaaaatggcatggttggt |
52133789 |
T |
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| Q |
121 |
agcataggtaacctctatcatagtgttgaaactctgtctgataattatatggaacaaaaccaaactaaagacgaactcttgaacccaagagctcctgtct |
220 |
Q |
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| T |
52133788 |
agcataggtaacctctatcatagtgttgaaactctgtctgataattatatggaacaaaaccaaactaaggaggaactcttgaacccaatagctcctgtct |
52133689 |
T |
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| Q |
221 |
ct |
222 |
Q |
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| T |
52133688 |
ct |
52133687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 150
Target Start/End: Complemental strand, 52154997 - 52154932
Alignment:
| Q |
85 |
gtagttaaactactgagcaaaaatggcatggttggtagcataggtaacctctatcatagtgttgaa |
150 |
Q |
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| T |
52154997 |
gtagttaaactcctgggcaacaatgacatggttggtagcataggaaacatttatcaaagtgttgaa |
52154932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0150 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0150
Description:
Target: scaffold0150; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 22 - 191
Target Start/End: Complemental strand, 9097 - 8928
Alignment:
| Q |
22 |
gctgaagcttccaaagctgtgattgattttctcttaaacttgcttcgcttgccagtcggtacagtagttaaactactgagcaaaaatggcatggttggta |
121 |
Q |
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| T |
9097 |
gctgaagcatcaaaagctgtgatagattttcttttcaatctgcttcgtttgccagttggtactgttgttaaacttttaaacaagaatggcatggttggta |
8998 |
T |
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| Q |
122 |
gcataggtaacctctatcatagtgttgaaactctgtctgataattatatggaacaaaaccaaactaaaga |
191 |
Q |
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| T |
8997 |
gcattggtaatctctataacagtgttgaaactttgtccgataattatatggaacaagaacaaactaaaga |
8928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 4e-34; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 22 - 191
Target Start/End: Original strand, 17020173 - 17020342
Alignment:
| Q |
22 |
gctgaagcttccaaagctgtgattgattttctcttaaacttgcttcgcttgccagtcggtacagtagttaaactactgagcaaaaatggcatggttggta |
121 |
Q |
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| T |
17020173 |
gctgaagcatcaaaagctgtgatagattttcttttcaatctgcttcgtttgccagttggtactgttgttaaacttttaaacaagaatggcatggttggta |
17020272 |
T |
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| Q |
122 |
gcataggtaacctctatcatagtgttgaaactctgtctgataattatatggaacaaaaccaaactaaaga |
191 |
Q |
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| T |
17020273 |
gcattggtaatctctataacagtgttgaaactttgtccgatcattatatggaacaagaccaaactaaaga |
17020342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 22 - 191
Target Start/End: Original strand, 17550610 - 17550779
Alignment:
| Q |
22 |
gctgaagcttccaaagctgtgattgattttctcttaaacttgcttcgcttgccagtcggtacagtagttaaactactgagcaaaaatggcatggttggta |
121 |
Q |
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| T |
17550610 |
gctgaagcatcaaaagctgtgatagattttcttttcaatctgcttcgtttgccagttggtactgttgttaaacttttaaacaagaatggcatggttggta |
17550709 |
T |
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| Q |
122 |
gcataggtaacctctatcatagtgttgaaactctgtctgataattatatggaacaaaaccaaactaaaga |
191 |
Q |
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| T |
17550710 |
gcattggtaatctctataacagtgttgaaactttgtccgatcattatatggaacaagaccaaactaaaga |
17550779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 22 - 151
Target Start/End: Original strand, 17522331 - 17522460
Alignment:
| Q |
22 |
gctgaagcttccaaagctgtgattgattttctcttaaacttgcttcgcttgccagtcggtacagtagttaaactactgagcaaaaatggcatggttggta |
121 |
Q |
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||||||||||| ||||||||| |||| ||||| || |||||||| |||||||| |||| || || || || ||||| ||| ||||||||||||||||| |
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| T |
17522331 |
gctgaagcttcaaaagctgtggttgactttcttttcaacttgctatgcttgccaatcggcactgttgtgaagctactaagcgcaaatggcatggttggta |
17522430 |
T |
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| Q |
122 |
gcataggtaacctctatcatagtgttgaaa |
151 |
Q |
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| T |
17522431 |
gcttagggaatctgtatgagagtgttgaaa |
17522460 |
T |
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