View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10371_low_39 (Length: 229)
Name: NF10371_low_39
Description: NF10371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10371_low_39 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
| [»] chr8 (3 HSPs) |
| |
|
| [»] scaffold0427 (1 HSPs) |
| | |
|
| [»] scaffold0008 (1 HSPs) |
| | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 6 - 229
Target Start/End: Complemental strand, 24318171 - 24317948
Alignment:
| Q |
6 |
aatttgctcgtcctttccagcttgttttgatttcaacaactattgtcgctttagatctacttcttgctgaaattcgaggtatcacgactctttctccaga |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
24318171 |
aatttgctcgtcctttccagcttgttttgatttcaacaactcttgtcgctttagatctacttcttgctgaaattcgaggtatcccgactctttctccaga |
24318072 |
T |
|
| Q |
106 |
ttctccacaaaacaactagtaaccttaaccttctttagtaaattgatcagttgctccagattatgttcttcggagtcctttttagttgccattgattgtg |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| || |
|
|
| T |
24318071 |
ttctccacaaaacaactagtaaccttaaccttctttagtaaattgatcagttgctccagattatgttcttctgagtccttttaagttgccattgattatg |
24317972 |
T |
|
| Q |
206 |
tgcttttggttgattccatggtta |
229 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
24317971 |
tgcttttggttgattccatggtta |
24317948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 12 - 229
Target Start/End: Complemental strand, 20550332 - 20550115
Alignment:
| Q |
12 |
ctcgtcctttccagcttgttttgatttcaacaactattgtcgctttagatctacttcttgctgaaattcgaggtatcacgactctttctccagattctcc |
111 |
Q |
| |
|
|||||| ||||||||||||||||| || ||||||||||||||||| || || |||||||||| ||||| ||||||| | |||||||||||| |||||| |
|
|
| T |
20550332 |
ctcgtcttttccagcttgttttgacttaaacaactattgtcgcttcagctccgcttcttgctggaattcaaggtatcctggctctttctccagcttctcc |
20550233 |
T |
|
| Q |
112 |
acaaaacaactagtaaccttaaccttctttagtaaattgatcagttgctccagattatgttcttcggagtcctttttagttgccattgattgtgtgcttt |
211 |
Q |
| |
|
| |||| ||||||||||||| || ||||||| ||| || | || |||||| | ||| |||||||||| |||| || | | |||||| || |||||||| |
|
|
| T |
20550232 |
ataaaagaactagtaaccttcacattctttaataactttaccaattgctcgaaattttgttcttcggtctcctcatttggtaccattgtttatgtgcttt |
20550133 |
T |
|
| Q |
212 |
tggttgattccatggtta |
229 |
Q |
| |
|
||||||| |||||||||| |
|
|
| T |
20550132 |
tggttgagtccatggtta |
20550115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 154
Target Start/End: Complemental strand, 24188055 - 24187914
Alignment:
| Q |
13 |
tcgtcctttccagcttgttttgatttcaacaactattgtcgctttagatctacttcttgctgaaattcgaggtatcacgactctttctccagattctcca |
112 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||||| || || | |||||||||||||| ||||||| || |||||| |||| |||| || |
|
|
| T |
24188055 |
tcgtcctttccagcttgttttgacttcaacaactcttgtcgctgcagtcctgcctcttgctgaaattcaaggtatcccggctctttttccaacttcttca |
24187956 |
T |
|
| Q |
113 |
caaaacaactagtaaccttaaccttctttagtaaattgatca |
154 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
24187955 |
caaaagaactagtaaccttcaccttctttagtaatttgatca |
24187914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 7e-33; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 10 - 229
Target Start/End: Original strand, 24537291 - 24537510
Alignment:
| Q |
10 |
tgctcgtcctttccagcttgttttgatttcaacaactattgtcgctttagatctacttcttgctgaaattcgaggtatcacgactctttctccagattct |
109 |
Q |
| |
|
||||| || ||||||||||| ||||| ||| ||||| ||||||||||| ||||||||||||||||||||| ||||| | | ||||||||||| |||| |
|
|
| T |
24537291 |
tgctcttcttttccagcttggtttgacttccgcaactcttgtcgctttaaatctacttcttgctgaaattcaaggtaccctggctctttctccaacttct |
24537390 |
T |
|
| Q |
110 |
ccacaaaacaactagtaaccttaaccttctttagtaaattgatcagttgctccagattatgttcttcggagtcctttttagttgccattgattgtgtgct |
209 |
Q |
| |
|
|||||||| || ||| ||||| |||||||| |||||| |||||| |||||| ||||| || || || |||| || || || ||||||| ||||| | |
|
|
| T |
24537391 |
ccacaaaagaagaagtcacctttaccttcttgagtaaagtgatcacttgctctagattttgatcctccatctcctcttcagctgtcattgatcgtgtgtt |
24537490 |
T |
|
| Q |
210 |
tttggttgattccatggtta |
229 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
24537491 |
tttggttgattccatggtta |
24537510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 108 - 229
Target Start/End: Complemental strand, 26826066 - 26825945
Alignment:
| Q |
108 |
ctccacaaaacaactagtaaccttaaccttctttagtaaattgatcagttgctccagattatgttcttcggagtcctttttagttgccattgattgtgtg |
207 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||| |||||| |||| ||||| || |||||||||||||| ||| || ||| ||||| | |||| |
|
|
| T |
26826066 |
ctccacaaaagaactagtaaccttcaccttctttaataaatttatcaattgcttcaaattatgttcttcggttgcctcattgattgtcattgttggtgtc |
26825967 |
T |
|
| Q |
208 |
cttttggttgattccatggtta |
229 |
Q |
| |
|
||||||||||||||||| |||| |
|
|
| T |
26825966 |
cttttggttgattccattgtta |
26825945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 112
Target Start/End: Complemental strand, 26827369 - 26827267
Alignment:
| Q |
10 |
tgctcgtcctttccagcttgttttgatttcaacaactattgtcgctttagatctacttcttgctgaaattcgaggtatcacgactctttctccagattct |
109 |
Q |
| |
|
|||||||| ||||||||||||||||| | || ||||| ||||||||| || || ||||||||||| ||||| |||| | | |||||||||||| |||| |
|
|
| T |
26827369 |
tgctcgtcttttccagcttgttttgactgcatcaactcttgtcgcttcagctccacttcttgctggaattcatggtaccctggctctttctccagcttct |
26827270 |
T |
|
| Q |
110 |
cca |
112 |
Q |
| |
|
||| |
|
|
| T |
26827269 |
cca |
26827267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0427 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: scaffold0427
Description:
Target: scaffold0427; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 10 - 140
Target Start/End: Complemental strand, 5011 - 4881
Alignment:
| Q |
10 |
tgctcgtcctttccagcttgttttgatttcaacaactattgtcgctttagatctacttcttgctgaaattcgaggtatcacgactctttctccagattct |
109 |
Q |
| |
|
||||| || |||| ||||||| |||| |||||||||| || |||||||| |||||||||||||| |||||||||||||| ||||||||| ||||| |||| |
|
|
| T |
5011 |
tgctcatcttttcgagcttgtgttgacttcaacaactcttatcgctttatatctacttcttgctaaaattcgaggtatcccgactctttttccagcttct |
4912 |
T |
|
| Q |
110 |
ccacaaaacaactagtaaccttaaccttctt |
140 |
Q |
| |
|
|||||||| || | || |||||||||||||| |
|
|
| T |
4911 |
ccacaaaagaagtcgtcaccttaaccttctt |
4881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 10 - 177
Target Start/End: Original strand, 233384 - 233551
Alignment:
| Q |
10 |
tgctcgtcctttccagcttgttttgatttcaacaactattgtcgctttagatctacttcttgctgaaattcgaggtatcacgactctttctccagattct |
109 |
Q |
| |
|
||||| ||||||||||| |||||||| || | ||||| |||||||| || |||||||| || || ||||||||||| | | ||||||| |||| |||| |
|
|
| T |
233384 |
tgctcatcctttccagcctgttttgactttagcaactcctgtcgcttcagctctacttcatgatggaattcgaggtaccctggctctttcaccagcttct |
233483 |
T |
|
| Q |
110 |
ccacaaaacaactagtaaccttaaccttctttagtaaattgatcagttgctccagattatgttcttcg |
177 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||| |||||| | || |||||||| ||| ||||||||| |
|
|
| T |
233484 |
ccacaaaagaactagtaaccttcaccttctttaataaatttaccaattgctccaaattttgttcttcg |
233551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 42 - 229
Target Start/End: Complemental strand, 16230937 - 16230751
Alignment:
| Q |
42 |
caactattgtcgctttagatctacttcttgctgaaattcgaggtatcacgactctttctccagattctccacaaaacaactagtaaccttaaccttcttt |
141 |
Q |
| |
|
||||| ||||||||| || || ||||||||| ||| ||| | |||||| | |||||||||||| || || |||||| ||||||||||||| ||||||||| |
|
|
| T |
16230937 |
caactcttgtcgcttcagctcaacttcttgcggaa-ttcaatgtatcatggctctttctccagcttttctacaaaagaactagtaaccttcaccttcttt |
16230839 |
T |
|
| Q |
142 |
agtaaattgatcagttgctccagattatgttcttcggagtcctttttagttgccattgattgtgtgcttttggttgattccatggtta |
229 |
Q |
| |
|
||||| || | || ||||||| ||| |||| |||| || | || |||||||||| | ||||||||||||||| |||||||||| |
|
|
| T |
16230838 |
agtaactttaccaattgctcccaattttgtttttcgatctcttcatttgttgccattgtctttgtgcttttggttgagtccatggtta |
16230751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 26 - 225
Target Start/End: Complemental strand, 3398807 - 3398608
Alignment:
| Q |
26 |
cttgttttgatttcaacaactattgtcgctttagatctacttcttgctgaaattcgaggtatcacgactctttctccagattctccacaaaacaactagt |
125 |
Q |
| |
|
|||||||||| |||||||||| || ||||||||||| | ||||| ||||||| | ||||||| |||||||| ||| ||||||||| | || | || |
|
|
| T |
3398807 |
cttgttttgacttcaacaactcttatcgctttagatgaatttctttctgaaatgcaaggtatcctgactcttttcccatcttctccacataggaattcgt |
3398708 |
T |
|
| Q |
126 |
aaccttaaccttctttagtaaattgatcagttgctccagattatgttcttcggagtcctttttagttgccattgattgtgtgcttttggttgattccatg |
225 |
Q |
| |
|
|||||||||||||| | ||| ||||| |||||| || |||||||| |||| ||||||| ||||||||||||| ||||||||||||| |||| |
|
|
| T |
3398707 |
caccttaaccttcttgaataaggagatcaagtgctcctagttctgttcttccatttcctctttagtttccattgattgtgtacttttggttgattacatg |
3398608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University