View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10371_low_4 (Length: 441)
Name: NF10371_low_4
Description: NF10371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10371_low_4 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 39 - 441
Target Start/End: Complemental strand, 42635726 - 42635318
Alignment:
| Q |
39 |
gaatcgaatcaaatcaatttcaacagaaatgactagagtccacatacactctcattgcattcccagttttctttgatcaacaatggcttgcattcctcac |
138 |
Q |
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| T |
42635726 |
gaatcgaatcaaatcaatttcaacagaaatgactagaagccacaaacactctcattgcattcccagttttctttgatcaacaatggcctgcattcctcac |
42635627 |
T |
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| Q |
139 |
attctctctcctctttctcactctacaccacttgctaatctcatcaataaaaccaatttcgagattcacagcataacttccatcatcatttccccaaatt |
238 |
Q |
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||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||| |
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| T |
42635626 |
attctttctcctctttctcactctacaacacttgctaatctcatcaatataaccaatttcgagattcacaacagaacttccatcatcatttccccaaatt |
42635527 |
T |
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| Q |
239 |
caaggccaaagaagaag------aagatcttcgccattggaaatcgtgtcggtgttgatactgaaactgcagttatcgaaattgagaagcgccaattgca |
332 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42635526 |
caaggccaaagaagaagaagaagaagatcttcgccattggaaatcgtgtcggtgttgatactgaaactgcagttatcgaaattgagaagcgccaattgca |
42635427 |
T |
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| Q |
333 |
actttccaaaggccacccctcaccctacggtgccactcctcaagaagacggggtcaatttcgccatttactcactcaattcactctcagctactctctgc |
432 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
42635426 |
actttccaaaggccacccctcaccctacggtgccactcctcaagaagacggggtcaatttcgccattaattcactcaattcactctcagctactctctgc |
42635327 |
T |
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| Q |
433 |
ttctccact |
441 |
Q |
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|||| |||| |
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| T |
42635326 |
ttcttcact |
42635318 |
T |
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