View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10371_low_5 (Length: 434)
Name: NF10371_low_5
Description: NF10371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10371_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 15 - 427
Target Start/End: Complemental strand, 42659237 - 42658825
Alignment:
| Q |
15 |
gtcattgtaattgtattacgcttgtttgtacaaaactgtcatgacattgaaattgaactatatatacttacataatggcaccaccttcaagatggaaatt |
114 |
Q |
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| T |
42659237 |
gtcattgtaattgtattacgcttgtttgtacaaaactgtcatgacattgaaattgaactatatatacttacataatggcaccaccttcaagatggaaatt |
42659138 |
T |
|
| Q |
115 |
tctaaattaagcaatactttaatactactatacttttctatgtacttacacagggcagaatgtagtggaatttaaatgacctctaattctgaaatgccat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42659137 |
tctaaattaagcaatactttaatactactatacttttctatgtacttacacagggcagaatgtagtggaatttaaatgacctctaattctgaaatgccat |
42659038 |
T |
|
| Q |
215 |
aatttccctttagaatacaacaaattctcatcacaaagaaactcccaagaaaaccacttctctatcattcgatctacgtcatgtacaagtacatctgaac |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||| |
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| T |
42659037 |
aatttccctttagaatacaacaaattctcatcacaaagaaactcccaagaaaaccatttttctatcattcgatctacatcatgtacaagtacatctgaac |
42658938 |
T |
|
| Q |
315 |
cattcccacctctagctagaacaccagcagtgtaaaaggatgccattctaccaggtgactcggtcgaatcgccactcggtccatcgaccactatgacatc |
414 |
Q |
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|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
42658937 |
cattcccacctctagctagaacactagcagtgtaaatggatgccattctaccaggtgactcggtcgaaaggccactcggtccatcgaccactatgacatc |
42658838 |
T |
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| Q |
415 |
ccaattcttctca |
427 |
Q |
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| T |
42658837 |
ccaattcttctca |
42658825 |
T |
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