View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10372_3 (Length: 382)
Name: NF10372_3
Description: NF10372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10372_3 |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 5e-84; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 216 - 373
Target Start/End: Original strand, 37619084 - 37619241
Alignment:
| Q |
216 |
tggcattgtgccatcctttcttagtcaccaataacggaccggtaacttccctcaattcaacttttcttcgtggaacgacaccttcatccttttatgtgaa |
315 |
Q |
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| T |
37619084 |
tggcattgtgccatcctttcttagtcaccaataacggaccggtaacttccctcaattcaacttttcttcgtggaacgacaccttcatccttttatgtgaa |
37619183 |
T |
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| Q |
316 |
tagaaaactgaaaacctgtaaccttaaaaatgtatctgtttcaattagttgttcatct |
373 |
Q |
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| T |
37619184 |
tagaaaactgaaaacctgtaaccttaaaaatgtatctgtttcaattagttgttcatct |
37619241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 37618869 - 37619010
Alignment:
| Q |
1 |
tgtctgtgttgttggataaagtttaggtgtttgtttgttgccatcccaatttcatctcaaatcttctatagcaaataatccgaaagaaactaacgttcta |
100 |
Q |
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| T |
37618869 |
tgtctgtgttgttggataaagtttaggtgtttgtttgttgccatcccaatttcatctcaaatctgctatagcaaataatccgaaagaaactaacgttcta |
37618968 |
T |
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| Q |
101 |
tgtcatgtaaatcgattaaatcagaaccatgtgttctatatc |
142 |
Q |
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| T |
37618969 |
tgtcatgtaaatcgattaaatcagaaccatgtgttctatatc |
37619010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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