View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10372_high_1 (Length: 355)
Name: NF10372_high_1
Description: NF10372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10372_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 75 - 338
Target Start/End: Complemental strand, 5531629 - 5531343
Alignment:
| Q |
75 |
aacacatttgaagacacaactaactaatgaaagacggattaaaggactaaactaagtaatgnnnnnnn-tgtgtttaggtatctttttataattttgatg |
173 |
Q |
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| T |
5531629 |
aacacatttgaagaccaaactaactaatgaaagacggattaaaggactaaactaagtaacgaaaaaaaatgtgtttaagtatctttttataattttgata |
5531530 |
T |
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| Q |
174 |
cattcaagaactatt----------------------atttaaagaccaaatttgttgcttactcatattttgaaggaaaaaagagcagtaccttgtcaa |
251 |
Q |
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| T |
5531529 |
cattcaagaactattgcgacactgccacgcatattatatttaaagaccaaaattgttgcttactcatattttgaaggaaaaaagagcagtaccttgtcaa |
5531430 |
T |
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| Q |
252 |
atgaaccaagttgtactaagccttctttgacagcaatgacagcaatagtctaccaaaaatgaatagtaaattgatagcattataatt |
338 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5531429 |
atgaaccaagttgtactaagccttctttgacagcaatgacagcaatagtctaccaaaaatgaatagtaaattgatagcattataatt |
5531343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 5531748 - 5531680
Alignment:
| Q |
1 |
taaatgtgtgatacattgttgttactataaaccttgaattctacgggtatcaaaattacaaaaacatct |
69 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5531748 |
taaatgtgtgatacattgttgttactataaaccttgaattctacgggtatcaaaattacaaaaacatct |
5531680 |
T |
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