View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10372_low_1 (Length: 382)
Name: NF10372_low_1
Description: NF10372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10372_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 148; Significance: 5e-78; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 37619231 - 37619084
Alignment:
| Q |
1 |
ctaattgaaacagatacatttttaaggttacaggttttcagttttctattcacataaaaggatgaaggtgtcgttccacgaagaaaagttgaattgaggg |
100 |
Q |
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| T |
37619231 |
ctaattgaaacagatacatttttaaggttacaggttttcagttttctattcacataaaaggatgaaggtgtcgttccacgaagaaaagttgaattgaggg |
37619132 |
T |
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| Q |
101 |
aagttaccggtccgttattggtgactaagaaaggatggcacaatgcca |
148 |
Q |
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| T |
37619131 |
aagttaccggtccgttattggtgactaagaaaggatggcacaatgcca |
37619084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 222 - 364
Target Start/End: Complemental strand, 37619010 - 37618868
Alignment:
| Q |
222 |
gatatagaacacatggttctgatttaatcgatttacatgacatagaacgttagtttctttcggattatttgctatagaagatttgagatgaaattgggat |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
37619010 |
gatatagaacacatggttctgatttaatcgatttacatgacatagaacgttagtttctttcggattatttgctatagcagatttgagatgaaattgggat |
37618911 |
T |
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| Q |
322 |
ggcaacaaacaaacacctaaactttatccaacaacacagacat |
364 |
Q |
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| T |
37618910 |
ggcaacaaacaaacacctaaactttatccaacaacacagacat |
37618868 |
T |
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