View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10373_high_12 (Length: 239)

Name: NF10373_high_12
Description: NF10373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10373_high_12
NF10373_high_12
[»] chr8 (9 HSPs)
chr8 (5-223)||(10559979-10560200)
chr8 (12-74)||(6950404-6950468)
chr8 (11-45)||(38602440-38602474)
chr8 (186-224)||(39881644-39881682)
chr8 (11-57)||(43368623-43368669)
chr8 (11-56)||(4560604-4560649)
chr8 (11-77)||(9700080-9700148)
chr8 (13-83)||(39881646-39881718)
chr8 (14-83)||(11376776-11376847)
[»] chr4 (10 HSPs)
chr4 (13-78)||(18628478-18628545)
chr4 (11-57)||(1017129-1017175)
chr4 (13-57)||(18512440-18512484)
chr4 (11-57)||(19305027-19305073)
chr4 (11-45)||(27043753-27043787)
chr4 (15-78)||(33534096-33534161)
chr4 (11-57)||(55870265-55870311)
chr4 (11-56)||(24193634-24193679)
chr4 (19-59)||(34398615-34398655)
chr4 (186-222)||(54277248-54277284)
[»] chr7 (9 HSPs)
chr7 (3-75)||(529443-529517)
chr7 (13-54)||(32730173-32730214)
chr7 (11-54)||(5276594-5276637)
chr7 (11-78)||(22387819-22387888)
chr7 (11-83)||(28691759-28691832)
chr7 (11-48)||(47046031-47046068)
chr7 (13-57)||(431413-431457)
chr7 (11-39)||(12234812-12234840)
chr7 (14-83)||(19302489-19302559)
[»] chr2 (16 HSPs)
chr2 (14-83)||(18525167-18525234)
chr2 (11-57)||(15370246-15370292)
chr2 (11-57)||(16785283-16785329)
chr2 (24-83)||(29430831-29430892)
chr2 (1-83)||(8017507-8017591)
chr2 (11-58)||(26372650-26372697)
chr2 (11-57)||(13866979-13867025)
chr2 (11-57)||(21616583-21616629)
chr2 (11-57)||(22878199-22878245)
chr2 (24-74)||(13864717-13864769)
chr2 (11-48)||(40837360-40837397)
chr2 (1-45)||(18179062-18179106)
chr2 (190-222)||(19243646-19243678)
chr2 (13-78)||(26548531-26548598)
chr2 (13-70)||(35809953-35810012)
chr2 (14-58)||(43569807-43569851)
[»] chr1 (10 HSPs)
chr1 (11-83)||(10199331-10199405)
chr1 (14-57)||(29793624-29793667)
chr1 (15-78)||(4757416-4757481)
chr1 (11-79)||(30257760-30257831)
chr1 (11-74)||(15558295-15558358)
chr1 (11-45)||(6292605-6292639)
chr1 (13-59)||(15515655-15515701)
chr1 (11-78)||(41638231-41638300)
chr1 (11-73)||(5157155-5157219)
chr1 (13-79)||(32958714-32958782)
[»] chr5 (8 HSPs)
chr5 (11-57)||(14706207-14706253)
chr5 (11-57)||(36796630-36796676)
chr5 (8-83)||(38728475-38728552)
chr5 (24-73)||(10303879-10303930)
chr5 (18-79)||(12407660-12407723)
chr5 (186-214)||(12407663-12407691)
chr5 (19-80)||(15015920-15015982)
chr5 (11-55)||(17369306-17369350)
[»] chr3 (6 HSPs)
chr3 (15-83)||(28881686-28881755)
chr3 (11-44)||(26990148-26990181)
chr3 (190-222)||(2081008-2081040)
chr3 (13-57)||(22667504-22667548)
chr3 (13-57)||(22724143-22724187)
chr3 (182-222)||(33965413-33965453)
[»] chr6 (6 HSPs)
chr6 (11-57)||(738464-738510)
chr6 (11-57)||(8010458-8010504)
chr6 (24-83)||(32848532-32848593)
chr6 (14-55)||(13908343-13908384)
chr6 (14-58)||(740812-740856)
chr6 (11-55)||(31776195-31776239)


Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 5 - 223
Target Start/End: Complemental strand, 10560200 - 10559979
Alignment:
Q  5 tctgactggattgacttagttgagcttatctactgacataaacatttgtgagaatttgggagagcttatgaaaatagctactggcacatc---aagttgt 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||    
T  10560200 tctgactggattgacttagttgagcttatctactgacataaacatttgtgagaatttgggagagcttatgaaaatagctactggcacatcgataagttgt 10560101  T
Q  102 ttgcatcttatttccgtaagctcacaaatgtagcttacaaaagcagcttatggctcgtaagctttttctatgggtgtttaacatgtgtttatgtcaatag 201  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10560100 ttgcatcttatttccgtcagctcacaaatgtagcttacgaaagcagcttatggctcgtaagctttttctatgggtgtttaacatgtgtttatgtcaatag 10560001  T
Q  202 ataagttcaaatatgtcaatca 223  Q
    ||||||||||||| ||||||||    
T  10560000 ataagttcaaataagtcaatca 10559979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 6950468 - 6950404
Alignment:
Q  12 ggattgacttagttgagcttatctactgacataaacatttgtgaga--atttgggagagcttatg 74  Q
    ||||||||||| ||||| |||||||||| |||||||||||||||||   ||||||||||||||||    
T  6950468 ggattgacttatttgagtttatctactggcataaacatttgtgagattgtttgggagagcttatg 6950404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 45
Target Start/End: Complemental strand, 38602474 - 38602440
Alignment:
Q  11 tggattgacttagttgagcttatctactgacataa 45  Q
    |||||||||||| ||||||||||||||||||||||    
T  38602474 tggattgacttatttgagcttatctactgacataa 38602440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 224
Target Start/End: Complemental strand, 39881682 - 39881644
Alignment:
Q  186 gtgtttatgtcaatagataagttcaaatatgtcaatcat 224  Q
    ||||||||| ||||||||||||||||||| |||||||||    
T  39881682 gtgtttatgccaatagataagttcaaataagtcaatcat 39881644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 43368623 - 43368669
Alignment:
Q  11 tggattgacttagttgagcttatctactgacataaacatttgtgaga 57  Q
    |||||||||||| |||| |||||||||| |||||| |||||||||||    
T  43368623 tggattgacttatttgatcttatctactaacataagcatttgtgaga 43368669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 4560649 - 4560604
Alignment:
Q  11 tggattgacttagttgagcttatctactgacataaacatttgtgag 56  Q
    |||||||||||| ||||||||||||| |||||||| || |||||||    
T  4560649 tggattgacttatttgagcttatctattgacataagcacttgtgag 4560604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 9700148 - 9700080
Alignment:
Q  11 tggattgacttagttgagcttatctactgacataaacatttgtgaga--atttgggagagcttatgaaa 77  Q
    |||||| ||||| |||||||||||||||  |||||||| ||||||||  ||||| |||||||| |||||    
T  9700148 tggattaacttatttgagcttatctactagcataaacacttgtgagactatttgagagagcttgtgaaa 9700080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 39881646 - 39881718
Alignment:
Q  13 gattgacttagttgagcttatctactgacataaacatttgtgagaat--ttgggagagcttatgaaaatagct 83  Q
    |||||||||| |||| |||||||| || |||||||| |||||||| |  |||| ||||||| |||||||||||    
T  39881646 gattgacttatttgaacttatctattggcataaacacttgtgagattgtttggaagagcttgtgaaaatagct 39881718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 11376847 - 11376776
Alignment:
Q  14 attgacttagttgagcttatctactgacataaacatttgtgaga--atttgggagagcttatgaaaatagct 83  Q
    |||| |||| ||||||||||||||||| ||||    ||||||||  |||||||||| |||||||||||||||    
T  11376847 attggcttatttgagcttatctactgatataagttcttgtgagactatttgggagaacttatgaaaatagct 11376776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 18628478 - 18628545
Alignment:
Q  13 gattgacttagttgagcttatctactgacataaacatttgtgaga--atttgggagagcttatgaaaa 78  Q
    ||||||| || ||||||||||||||||||||||||| ||||||||   ||||||||||||||||||||    
T  18628478 gattgacgtatttgagcttatctactgacataaacacttgtgagactgtttgggagagcttatgaaaa 18628545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 1017175 - 1017129
Alignment:
Q  11 tggattgacttagttgagcttatctactgacataaacatttgtgaga 57  Q
    |||||||||||| ||||||| ||||||||||||||||| ||||||||    
T  1017175 tggattgacttatttgagctaatctactgacataaacacttgtgaga 1017129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 18512440 - 18512484
Alignment:
Q  13 gattgacttagttgagcttatctactgacataaacatttgtgaga 57  Q
    |||| ||||| ||||||||||||||||||||||||| ||||||||    
T  18512440 gattaacttatttgagcttatctactgacataaacacttgtgaga 18512484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 19305073 - 19305027
Alignment:
Q  11 tggattgacttagttgagcttatctactgacataaacatttgtgaga 57  Q
    |||||||||||| ||||| ||||||| |||||||| |||||||||||    
T  19305073 tggattgacttatttgagattatctattgacataagcatttgtgaga 19305027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 45
Target Start/End: Original strand, 27043753 - 27043787
Alignment:
Q  11 tggattgacttagttgagcttatctactgacataa 45  Q
    |||||||||||| ||||||||||||||||||||||    
T  27043753 tggattgacttatttgagcttatctactgacataa 27043787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 33534096 - 33534161
Alignment:
Q  15 ttgacttagttgagcttatctactgacataaacatttgtgaga--atttgggagagcttatgaaaa 78  Q
    |||||||| ||||||||||||| ||||||||  | ||||||||  ||||| |||||||||||||||    
T  33534096 ttgacttatttgagcttatctagtgacataagtacttgtgagagtatttgagagagcttatgaaaa 33534161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 55870265 - 55870311
Alignment:
Q  11 tggattgacttagttgagcttatctactgacataaacatttgtgaga 57  Q
    |||||| ||||| ||||| ||||||| ||||||||||||||||||||    
T  55870265 tggattaacttatttgagtttatctaatgacataaacatttgtgaga 55870311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 24193679 - 24193634
Alignment:
Q  11 tggattgacttagttgagcttatctactgacataaacatttgtgag 56  Q
    |||||||||||| |||||||||||| ||| |||||||| |||||||    
T  24193679 tggattgacttatttgagcttatctcctggcataaacacttgtgag 24193634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 34398615 - 34398655
Alignment:
Q  19 cttagttgagcttatctactgacataaacatttgtgagaat 59  Q
    |||| ||||| ||||| ||||||||||||||||||||||||    
T  34398615 cttatttgagtttatccactgacataaacatttgtgagaat 34398655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 54277284 - 54277248
Alignment:
Q  186 gtgtttatgtcaatagataagttcaaatatgtcaatc 222  Q
    |||||||||||| |||||||||||||||| |||||||    
T  54277284 gtgtttatgtcactagataagttcaaataagtcaatc 54277248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 529517 - 529443
Alignment:
Q  3 ggtctgactggattgacttagttgagcttatctactgacataaacatttgtgag--aatttgggagagcttatga 75  Q
    ||||||| |||||||||||| |||||||||||||||| |||||||| |||||||   |||||||||| |||||||    
T  529517 ggtctgattggattgacttatttgagcttatctactggcataaacacttgtgaggctatttgggagaacttatga 529443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 32730173 - 32730214
Alignment:
Q  13 gattgacttagttgagcttatctactgacataaacatttgtg 54  Q
    |||||||||| ||||||||| |||||||||||||||||||||    
T  32730173 gattgacttatttgagcttacctactgacataaacatttgtg 32730214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 5276637 - 5276594
Alignment:
Q  11 tggattgacttagttgagcttatctactgacataaacatttgtg 54  Q
    ||||||||||||| |||||||||||||| ||||||||| |||||    
T  5276637 tggattgacttagatgagcttatctactaacataaacacttgtg 5276594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 22387819 - 22387888
Alignment:
Q  11 tggattgacttagttgagcttatctactgacataaacatttgtgaga--atttgggagagcttatgaaaa 78  Q
    |||||||||||| | || ||||| ||||||||||||||  |||||||   ||||||||||||||||||||    
T  22387819 tggattgacttactagaacttatttactgacataaacacgtgtgagactgtttgggagagcttatgaaaa 22387888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 83
Target Start/End: Original strand, 28691759 - 28691832
Alignment:
Q  11 tggattgacttagttgagcttatctactgacataaacatttgtgagaat-ttgggagagcttatgaaaatagct 83  Q
    |||||||||||| ||||| |||||| || |||||| ||||||||||| | || ||||| |||||||||| ||||    
T  28691759 tggattgacttatttgagtttatctgctaacataagcatttgtgagactgttcggagatcttatgaaaacagct 28691832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 48
Target Start/End: Original strand, 47046031 - 47046068
Alignment:
Q  11 tggattgacttagttgagcttatctactgacataaaca 48  Q
    |||||||||||| ||| |||||||||||||||||||||    
T  47046031 tggattgacttatttgtgcttatctactgacataaaca 47046068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 431457 - 431413
Alignment:
Q  13 gattgacttagttgagcttatctactgacataaacatttgtgaga 57  Q
    |||||||||| |||||  |||||||| ||||||||||||||||||    
T  431457 gattgacttatttgaggctatctactaacataaacatttgtgaga 431413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 39
Target Start/End: Original strand, 12234812 - 12234840
Alignment:
Q  11 tggattgacttagttgagcttatctactg 39  Q
    |||||||||||||||||||||||||||||    
T  12234812 tggattgacttagttgagcttatctactg 12234840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 19302489 - 19302559
Alignment:
Q  14 attgacttagttgagcttatctactgacataaacatttgtgaga--atttgggagagcttatgaaaatagct 83  Q
    ||||||||| |||||||||||||||||||| ||  |||||||||  ||||||||||  ||||||||| ||||    
T  19302489 attgacttatttgagcttatctactgacat-aagttttgtgagaatatttgggagaatttatgaaaacagct 19302559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 18525167 - 18525234
Alignment:
Q  14 attgacttagttgagcttatctactgacataaacatttgtgagaatttgggagagcttatgaaaatagct 83  Q
    ||||||||| |||||||||||||| |||||||||| | |||||  |||| ||||||||||||||||||||    
T  18525167 attgacttatttgagcttatctacagacataaacactcgtgag--tttgagagagcttatgaaaatagct 18525234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 15370246 - 15370292
Alignment:
Q  11 tggattgacttagttgagcttatctactgacataaacatttgtgaga 57  Q
    |||||||||||| |||||||||||||||| ||||| |||||||||||    
T  15370246 tggattgacttatttgagcttatctactggcataagcatttgtgaga 15370292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 16785283 - 16785329
Alignment:
Q  11 tggattgacttagttgagcttatctactgacataaacatttgtgaga 57  Q
    ||||||||||||||||||||||| ||||| ||||| |||||||||||    
T  16785283 tggattgacttagttgagcttatttactgtcataagcatttgtgaga 16785329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 83
Target Start/End: Complemental strand, 29430892 - 29430831
Alignment:
Q  24 ttgagcttatctactgacataaacatttgtgaga--atttgggagagcttatgaaaatagct 83  Q
    ||||||||||||||||||||||||| ||||| ||  |||||| ||| |||||||||||||||    
T  29430892 ttgagcttatctactgacataaacacttgtgggactatttggaagaacttatgaaaatagct 29430831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 8017591 - 8017507
Alignment:
Q  1 aaggtctgactggattgacttagttgagcttatctactgacataaacatttgtgaga--atttgggagagcttatgaaaatagct 83  Q
    ||||||||  |||||||||||| ||||| ||||||| |||||||| || ||||| ||  |||||||||| |||||||||| ||||    
T  8017591 aaggtctgtttggattgacttatttgaggttatctattgacataagcacttgtgcgattatttgggagaacttatgaaaacagct 8017507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 26372650 - 26372697
Alignment:
Q  11 tggattgacttagttgagcttatctactgacataaacatttgtgagaa 58  Q
    |||||||||| | |||||||||||| ||||||||| ||||||||||||    
T  26372650 tggattgactcatttgagcttatcttctgacataagcatttgtgagaa 26372697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 13867025 - 13866979
Alignment:
Q  11 tggattgacttagttgagcttatctactgacataaacatttgtgaga 57  Q
    ||||||||| || |||||||||||||||| |||||||| ||||||||    
T  13867025 tggattgacctatttgagcttatctactgccataaacacttgtgaga 13866979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 21616583 - 21616629
Alignment:
Q  11 tggattgacttagttgagcttatctactgacataaacatttgtgaga 57  Q
    |||||||||||| || || ||||| ||||||||||||||||||||||    
T  21616583 tggattgacttatttcagtttatccactgacataaacatttgtgaga 21616629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 22878245 - 22878199
Alignment:
Q  11 tggattgacttagttgagcttatctactgacataaacatttgtgaga 57  Q
    |||||||||||| ||||||||||| |||||||||| || ||||||||    
T  22878245 tggattgacttatttgagcttatccactgacataagcacttgtgaga 22878199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 74
Target Start/End: Complemental strand, 13864769 - 13864717
Alignment:
Q  24 ttgagcttatctactgacataaacatttgtgaga--atttgggagagcttatg 74  Q
    ||||||||||||||||||||||||| |||| |||  |||||| ||||||||||    
T  13864769 ttgagcttatctactgacataaacaattgtaagactatttggaagagcttatg 13864717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 48
Target Start/End: Original strand, 40837360 - 40837397
Alignment:
Q  11 tggattgacttagttgagcttatctactgacataaaca 48  Q
    ||||||| |||| |||||||||||||||||||||||||    
T  40837360 tggattggcttatttgagcttatctactgacataaaca 40837397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 18179106 - 18179062
Alignment:
Q  1 aaggtctgactggattgacttagttgagcttatctactgacataa 45  Q
    ||||||||  |||||||||||| ||||||||||||||| ||||||    
T  18179106 aaggtctgtttggattgacttatttgagcttatctactaacataa 18179062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 19243646 - 19243678
Alignment:
Q  190 ttatgtcaatagataagttcaaatatgtcaatc 222  Q
    |||||||| ||||||||||||||||||||||||    
T  19243646 ttatgtcagtagataagttcaaatatgtcaatc 19243678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 26548598 - 26548531
Alignment:
Q  13 gattgacttagttgagcttatctactgacataaacatttgtgaga--atttgggagagcttatgaaaa 78  Q
    ||||| |||| |||||||||||||| |||||||  ||||||||||  |||||| || |||||||||||    
T  26548598 gattggcttatttgagcttatctaccgacataagtatttgtgagactatttggaagggcttatgaaaa 26548531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 35810012 - 35809953
Alignment:
Q  13 gattgacttagttgagcttatctactgacataaacatttgtgaga--atttgggagagct 70  Q
    |||||||||| |||||||||||||| | ||||| || ||||||||  |||||||||||||    
T  35810012 gattgacttatttgagcttatctaccggcataagcagttgtgagactatttgggagagct 35809953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 43569851 - 43569807
Alignment:
Q  14 attgacttagttgagcttatctactgacataaacatttgtgagaa 58  Q
    ||||||||| ||||| ||||| |||| ||||||||||||||||||    
T  43569851 attgacttatttgaggttatccactggcataaacatttgtgagaa 43569807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 83
Target Start/End: Original strand, 10199331 - 10199405
Alignment:
Q  11 tggattgacttagttgagcttatctactgacataaacatttgtgaga--atttgggagagcttatgaaaatagct 83  Q
    |||||||||||| ||||||||||||||| |||||| || |||||| |  |||||||||| || ||||||||||||    
T  10199331 tggattgacttatttgagcttatctactaacataagcacttgtgacactatttgggagaactcatgaaaatagct 10199405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 29793624 - 29793667
Alignment:
Q  14 attgacttagttgagcttatctactgacataaacatttgtgaga 57  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||    
T  29793624 attgacttatttgagcttatctactgacataaacacttgtgaga 29793667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 4757481 - 4757416
Alignment:
Q  15 ttgacttagttgagcttatctactgacataaacatttgtgaga--atttgggagagcttatgaaaa 78  Q
    |||||||| ||||||||||||| ||||||||||| ||||||||  |||||| ||| ||||||||||    
T  4757481 ttgacttatttgagcttatctattgacataaacacttgtgagaccatttggcagaacttatgaaaa 4757416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 30257831 - 30257760
Alignment:
Q  11 tggattgacttagttgagcttatctactgacataaaca-tttgtgaga--atttgggagagcttatgaaaat 79  Q
    |||||| ||||| ||||| ||||||||||||||||||| |||||||||  |||| ||||||||||| |||||    
T  30257831 tggatttacttatttgagtttatctactgacataaacattttgtgagactatttaggagagcttataaaaat 30257760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 74
Target Start/End: Complemental strand, 15558358 - 15558295
Alignment:
Q  11 tggattgacttagttgagcttatctactgacataaacatttgtgagaatttgggagagcttatg 74  Q
    |||||||| ||| ||||||||||| |||| | |||||| |||||||| ||||||||| ||||||    
T  15558358 tggattgagttatttgagcttatcgactggcttaaacacttgtgagactttgggagaacttatg 15558295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 45
Target Start/End: Complemental strand, 6292639 - 6292605
Alignment:
Q  11 tggattgacttagttgagcttatctactgacataa 45  Q
    |||||||||||| ||||||||||||||||||||||    
T  6292639 tggattgacttatttgagcttatctactgacataa 6292605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 15515701 - 15515655
Alignment:
Q  13 gattgacttagttgagcttatctactgacataaacatttgtgagaat 59  Q
    |||||||||| |||||||||||||||| ||||||||  |||||||||    
T  15515701 gattgacttatttgagcttatctactggcataaacacgtgtgagaat 15515655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 41638231 - 41638300
Alignment:
Q  11 tggattgacttagttgagcttatctactgacataaacatttgtgaga--atttgggagagcttatgaaaa 78  Q
    ||||||| |||| |||||| ||||||||| ||||| |||||||||||   |||||||||| |||||||||    
T  41638231 tggattgtcttaattgagcctatctactggcataagcatttgtgagactgtttgggagagattatgaaaa 41638300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 5157219 - 5157155
Alignment:
Q  11 tggattgacttagttgagcttatctactgacataaacatttgtgaga--atttgggagagcttat 73  Q
    |||||||||||| |||| ||||||||| |||||||||| |||||| |   |||||||||||||||    
T  5157219 tggattgacttatttgaacttatctacggacataaacacttgtgaaactgtttgggagagcttat 5157155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 32958782 - 32958714
Alignment:
Q  13 gattgacttagttgagcttatctactgacataaacatttgtgag--aatttgggagagcttatgaaaat 79  Q
    |||||||||| |||||||||||||||| ||||| || |||||||   |||| ||||||||||| |||||    
T  32958782 gattgacttatttgagcttatctactgtcataagcacttgtgaggttattttggagagcttataaaaat 32958714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 14706207 - 14706253
Alignment:
Q  11 tggattgacttagttgagcttatctactgacataaacatttgtgaga 57  Q
    |||||||||||| ||||||||| ||||||||||||||| ||||||||    
T  14706207 tggattgacttatttgagcttacctactgacataaacacttgtgaga 14706253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 36796630 - 36796676
Alignment:
Q  11 tggattgacttagttgagcttatctactgacataaacatttgtgaga 57  Q
    |||||||||||| ||||||||||||| ||||||||||| ||||||||    
T  36796630 tggattgacttatttgagcttatctaatgacataaacacttgtgaga 36796676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 38728552 - 38728475
Alignment:
Q  8 gactggattgacttagttgagcttatctactgacataaacatttgtgagaat--ttgggagagcttatgaaaatagct 83  Q
    |||||||||||| || ||||||||||||| ||  |||||||  |||| || |  ||||||||||||||||||||||||    
T  38728552 gactggattgacatatttgagcttatctattggtataaacacctgtgtgattgtttgggagagcttatgaaaatagct 38728475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 10303930 - 10303879
Alignment:
Q  24 ttgagcttatctactgacataaacatttgtgaga--atttgggagagcttat 73  Q
    |||||||||||||| ||||||| |||||||||||  ||||| ||||||||||    
T  10303930 ttgagcttatctacggacataagcatttgtgagattatttgagagagcttat 10303879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 12407660 - 12407723
Alignment:
Q  18 acttagttgagcttatctactgacataaacatttgtgaga--atttgggagagcttatgaaaat 79  Q
    ||||| |||| |||||||| ||||||||||| ||||||||   |||| ||||||||||||||||    
T  12407660 acttatttgaacttatctattgacataaacacttgtgagacggtttgagagagcttatgaaaat 12407723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Complemental strand, 12407691 - 12407663
Alignment:
Q  186 gtgtttatgtcaatagataagttcaaata 214  Q
    |||||||||||||||||||||||||||||    
T  12407691 gtgtttatgtcaatagataagttcaaata 12407663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 15015982 - 15015920
Alignment:
Q  19 cttagttgagcttatctactgacataaacatttgtgaga--atttgggagagcttatgaaaata 80  Q
    |||| |||||||||||||||||||||| | |||||||||   ||||||||| ||||||||||||    
T  15015982 cttatttgagcttatctactgacataagc-tttgtgagactgtttgggagaacttatgaaaata 15015920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 17369350 - 17369306
Alignment:
Q  11 tggattgacttagttgagcttatctactgacataaacatttgtga 55  Q
    |||||||||||| |||| ||||||||||||||||| || ||||||    
T  17369350 tggattgacttatttgaacttatctactgacataatcacttgtga 17369306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 28881686 - 28881755
Alignment:
Q  15 ttgacttagttgagcttatctactgacataaacatttgtgaga--atttgggagagcttatgaaaatagct 83  Q
    |||| ||| ||||||||||||||||| |||  |||||||||||  ||||||||||||||||||||| ||||    
T  28881686 ttgatttatttgagcttatctactgatatag-catttgtgagattatttgggagagcttatgaaaacagct 28881755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 44
Target Start/End: Original strand, 26990148 - 26990181
Alignment:
Q  11 tggattgacttagttgagcttatctactgacata 44  Q
    |||||||||||| |||||||||||||||||||||    
T  26990148 tggattgacttatttgagcttatctactgacata 26990181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Complemental strand, 2081040 - 2081008
Alignment:
Q  190 ttatgtcaatagataagttcaaatatgtcaatc 222  Q
    ||||||||||||||||||||||||| |||||||    
T  2081040 ttatgtcaatagataagttcaaataagtcaatc 2081008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 22667548 - 22667504
Alignment:
Q  13 gattgacttagttgagcttatctactgacataaacatttgtgaga 57  Q
    ||||| |||| |||||||||||||||||||||| || ||||||||    
T  22667548 gattggcttatttgagcttatctactgacataagcacttgtgaga 22667504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 22724187 - 22724143
Alignment:
Q  13 gattgacttagttgagcttatctactgacataaacatttgtgaga 57  Q
    ||||| |||| |||||||||||||||||||||| || ||||||||    
T  22724187 gattggcttatttgagcttatctactgacataagcacttgtgaga 22724143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 33965453 - 33965413
Alignment:
Q  182 acatgtgtttatgtcaatagataagttcaaatatgtcaatc 222  Q
    ||||||||||| |||| |||||||| |||||||||||||||    
T  33965453 acatgtgtttaagtcagtagataagctcaaatatgtcaatc 33965413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 738464 - 738510
Alignment:
Q  11 tggattgacttagttgagcttatctactgacataaacatttgtgaga 57  Q
    |||||| ||||| ||||||||||||| ||| ||||||||||||||||    
T  738464 tggattaacttatttgagcttatctattgagataaacatttgtgaga 738510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 8010504 - 8010458
Alignment:
Q  11 tggattgacttagttgagcttatctactgacataaacatttgtgaga 57  Q
    ||||||||||||  |||||||||||| || |||||||||||||||||    
T  8010504 tggattgacttatgtgagcttatctattggcataaacatttgtgaga 8010458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 83
Target Start/End: Original strand, 32848532 - 32848593
Alignment:
Q  24 ttgagcttatctactgacataaacatttgtgag--aatttgggagagcttatgaaaatagct 83  Q
    |||||||||||||||||||||| ||||||||||    || ||||||||||||| ||||||||    
T  32848532 ttgagcttatctactgacataagcatttgtgagtccgttggggagagcttatggaaatagct 32848593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 13908384 - 13908343
Alignment:
Q  14 attgacttagttgagcttatctactgacataaacatttgtga 55  Q
    ||||||||| |||| |||||||||||||||||||| ||||||    
T  13908384 attgacttatttgaacttatctactgacataaacacttgtga 13908343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 740812 - 740856
Alignment:
Q  14 attgacttagttgagcttatctactgacataaacatttgtgagaa 58  Q
    ||||||||| ||||| |||||||||| ||| ||||||||||||||    
T  740812 attgacttatttgagattatctactgtcatgaacatttgtgagaa 740856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 31776195 - 31776239
Alignment:
Q  11 tggattgacttagttgagcttatctactgacataaacatttgtga 55  Q
    |||||||||||| ||||||||||||||||| ||| ||| ||||||    
T  31776195 tggattgacttatttgagcttatctactgatatatacacttgtga 31776239  T

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