View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10373_high_2 (Length: 481)

Name: NF10373_high_2
Description: NF10373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10373_high_2
NF10373_high_2
[»] chr3 (3 HSPs)
chr3 (225-368)||(3097638-3097780)
chr3 (21-126)||(3097780-3097884)
chr3 (32-105)||(16926950-16927023)
[»] scaffold0430 (1 HSPs)
scaffold0430 (204-257)||(3451-3504)
[»] chr4 (3 HSPs)
chr4 (201-249)||(16746125-16746173)
chr4 (201-255)||(16746908-16746962)
chr4 (32-105)||(6218214-6218287)
[»] chr8 (3 HSPs)
chr8 (32-105)||(15686041-15686114)
chr8 (201-253)||(14534153-14534205)
chr8 (82-132)||(3049363-3049413)
[»] chr7 (5 HSPs)
chr7 (32-105)||(31257032-31257105)
chr7 (199-255)||(5196022-5196078)
chr7 (32-107)||(48661556-48661631)
chr7 (32-105)||(2938213-2938286)
chr7 (200-247)||(23373765-23373813)
[»] chr1 (5 HSPs)
chr1 (33-90)||(5034317-5034374)
chr1 (32-71)||(34600686-34600725)
chr1 (32-105)||(38733162-38733234)
chr1 (99-143)||(48114378-48114422)
chr1 (49-105)||(49316163-49316219)
[»] chr2 (3 HSPs)
chr2 (32-107)||(8424896-8424971)
chr2 (32-105)||(17854693-17854766)
chr2 (32-105)||(18208998-18209071)
[»] chr5 (4 HSPs)
chr5 (41-115)||(12592731-12592805)
chr5 (32-105)||(25258302-25258375)
chr5 (32-105)||(25322092-25322165)
chr5 (32-104)||(1564568-1564640)
[»] scaffold0481 (1 HSPs)
scaffold0481 (32-105)||(3472-3545)
[»] scaffold0334 (1 HSPs)
scaffold0334 (33-105)||(4431-4503)
[»] chr6 (1 HSPs)
chr6 (32-108)||(24554124-24554200)


Alignment Details
Target: chr3 (Bit Score: 101; Significance: 7e-50; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 225 - 368
Target Start/End: Complemental strand, 3097780 - 3097638
Alignment:
Q  225 ctatttacatatttttgaatttttagtcccctttctcttaaaacccaactttttagtccctctattacgaaagtcaacaaaaacttttagttcccctcta 324  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| | |||||||||||||||||||||| |||||||||    
T  3097780 ctatttacatatttttgaatttttagtcccctttctcttaaaa-ccaactttttaatccctctatgatgaaagtcaacaaaaacttttag-tcccctcta 3097683  T
Q  325 aattagatgaagt-gcactgatttgcattaatgaattggaataaa 368  Q
    ||||||||||||| || ||||||| ||||||||||||||||||||    
T  3097682 aattagatgaagtggcgctgattttcattaatgaattggaataaa 3097638  T

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Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 21 - 126
Target Start/End: Complemental strand, 3097884 - 3097780
Alignment:
Q  21 cgtgggtggttttagaaatcatggttgagtttaacacaatctcacaaaactgtcttgtgcgatgaagattgttcccacttataaatatttattcatgtca 120  Q
    |||| ||| |||||||||| ||||||||||||||||||| |||| |||||||||||||| ||||||||||  ||||||||||||||||||||||||||||    
T  3097884 cgtgtgtgattttagaaattatggttgagtttaacacaacctcataaaactgtcttgtgagatgaagatt-atcccacttataaatatttattcatgtca 3097786  T
Q  121 tctatc 126  Q
    ||||||    
T  3097785 tctatc 3097780  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 16926950 - 16927023
Alignment:
Q  32 ttagaaatcatggttgagtttaacacaatctcacaaaactgtcttgtgcgatgaagattgttcccacttataaa 105  Q
    ||||||||| |||||||| ||||||||| | |||||||| | |||||| ||||| ||||   ||||||||||||    
T  16926950 ttagaaatcgtggttgagcttaacacaaccccacaaaaccggcttgtgagatgaggattacccccacttataaa 16927023  T

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Target: scaffold0430 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0430
Description:

Target: scaffold0430; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 204 - 257
Target Start/End: Original strand, 3451 - 3504
Alignment:
Q  204 ttaaatgcaattttaatccacctatttacatatttttgaatttttagtcccctt 257  Q
    |||||||||||||| |||| |||||||||||||||||||| ||||| |||||||    
T  3451 ttaaatgcaattttgatccccctatttacatatttttgaacttttaatcccctt 3504  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 16746125 - 16746173
Alignment:
Q  201 ggcttaaatgcaattttaatccacctatttacatatttttgaattttta 249  Q
    ||||||||||||||||| |||| |||||||||||||||||||| |||||    
T  16746125 ggcttaaatgcaattttgatccccctatttacatatttttgaactttta 16746173  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 255
Target Start/End: Complemental strand, 16746962 - 16746908
Alignment:
Q  201 ggcttaaatgcaattttaatccacctatttacatatttttgaatttttagtcccc 255  Q
    ||||||||||||||||| ||||  ||| ||||||||||||||| ||||| |||||    
T  16746962 ggcttaaatgcaattttgatccctctagttacatatttttgaacttttaatcccc 16746908  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 6218287 - 6218214
Alignment:
Q  32 ttagaaatcatggttgagtttaacacaatctcacaaaactgtcttgtgcgatgaagattgttcccacttataaa 105  Q
    ||||||||| |||||| || ||||||||   |||||||| |||||||| | |||||||||  ||||||||||||    
T  6218287 ttagaaatcgtggttgtgtctaacacaactccacaaaaccgtcttgtgaggtgaagattgcccccacttataaa 6218214  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 15686041 - 15686114
Alignment:
Q  32 ttagaaatcatggttgagtttaacacaatctcacaaaactgtcttgtgcgatgaagattgttcccacttataaa 105  Q
    ||||||||| ||||||||| |||||||||| |||||||| | |||||| | |||  ||| ||||||||||||||    
T  15686041 ttagaaatcgtggttgagtctaacacaatcccacaaaaccggcttgtgaggtgagaatttttcccacttataaa 15686114  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 14534153 - 14534205
Alignment:
Q  201 ggcttaaatgcaattttaatccacctatttacatatttttgaatttttagtcc 253  Q
    ||||||||||| ||||| |||| ||||||||||||||||| || |||||||||    
T  14534153 ggcttaaatgcgattttgatccccctatttacatatttttaaacttttagtcc 14534205  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 132
Target Start/End: Original strand, 3049363 - 3049413
Alignment:
Q  82 atgaagattgttcccacttataaatatttattcatgtcatctatcaaccga 132  Q
    ||||| |||| |||||||| ||||||||||| |||||||||| ||||||||    
T  3049363 atgaatattgctcccacttttaaatatttatccatgtcatctctcaaccga 3049413  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 31257032 - 31257105
Alignment:
Q  32 ttagaaatcatggttgagtttaacacaatctcacaaaactgtcttgtgcgatgaagattgttcccacttataaa 105  Q
    ||||||||| ||||||||| |||||||| | ||||||||||  ||||| | |||||||||  ||||||||||||    
T  31257032 ttagaaatcgtggttgagtctaacacaaccccacaaaactggtttgtgaggtgaagattgcccccacttataaa 31257105  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 5196078 - 5196022
Alignment:
Q  199 ttggcttaaatgcaattttaatccacctatttacatatttttgaatttttagtcccc 255  Q
    ||||||||||||||||||| |||| ||| |||||||| |||| || |||||||||||    
T  5196078 ttggcttaaatgcaatttttatcctcctctttacataattttcaacttttagtcccc 5196022  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 107
Target Start/End: Original strand, 48661556 - 48661631
Alignment:
Q  32 ttagaaatcatggttgagtttaacacaatctcacaaaactgtcttgtgcgatgaagattgttcccacttataaata 107  Q
    ||||||||| |||||| || ||||||||||||||||||| | |||||| | ||| |||||  ||||| ||||||||    
T  48661556 ttagaaatcgtggttgggtctaacacaatctcacaaaaccggcttgtgaggtgaggattgcccccacctataaata 48661631  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 2938286 - 2938213
Alignment:
Q  32 ttagaaatcatggttgagtttaacacaatctcacaaaactgtcttgtgcgatgaagattgttcccacttataaa 105  Q
    ||||||||| ||||||||||||| ||||| ||| |||| ||  ||||    |||||||||||||||||||||||    
T  2938286 ttagaaatcgtggttgagtttaatacaatttcataaaattgatttgtaatgtgaagattgttcccacttataaa 2938213  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 200 - 247
Target Start/End: Original strand, 23373765 - 23373813
Alignment:
Q  200 tggcttaaatgcaattttaatccacctatttacatat-ttttgaatttt 247  Q
    ||||||||||| |||||| |||| ||||||||||||| |||||||||||    
T  23373765 tggcttaaatgaaattttgatccccctatttacatatgttttgaatttt 23373813  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 33 - 90
Target Start/End: Original strand, 5034317 - 5034374
Alignment:
Q  33 tagaaatcatggttgagtttaacacaatctcacaaaactgtcttgtgcgatgaagatt 90  Q
    |||||||||| |||||||||||||||| | ||||||||||  ||||| ||||||||||    
T  5034317 tagaaatcattgttgagtttaacacaaccccacaaaactgatttgtgagatgaagatt 5034374  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 71
Target Start/End: Complemental strand, 34600725 - 34600686
Alignment:
Q  32 ttagaaatcatggttgagtttaacacaatctcacaaaact 71  Q
    ||||||||| ||||||||| ||||||||||||||||||||    
T  34600725 ttagaaatcgtggttgagtctaacacaatctcacaaaact 34600686  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 38733234 - 38733162
Alignment:
Q  32 ttagaaatcatggttgagtttaacacaatctcacaaaactgtcttgtgcgatgaagattgttcccacttataaa 105  Q
    ||||||||| |||||||   ||||||||||||||||||| | |||||| |||||  |||| |||||||||||||    
T  38733234 ttagaaatcgtggttgaacctaacacaatctcacaaaaccgacttgtgagatgagaattg-tcccacttataaa 38733162  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 48114422 - 48114378
Alignment:
Q  99 ttataaatatttattcatgtcatctatcaaccgacatgagactct 143  Q
    ||||||||| ||||||||||||||| ||||||||  |||||||||    
T  48114422 ttataaatacttattcatgtcatctctcaaccgatgtgagactct 48114378  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 49316163 - 49316219
Alignment:
Q  49 gtttaacacaatctcacaaaactgtcttgtgcgatgaagattgttcccacttataaa 105  Q
    |||||||||||   ||||||||||  ||||| |||||||||||| ||||||||||||    
T  49316163 gtttaacacaactccacaaaactgatttgtgagatgaagattgtccccacttataaa 49316219  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 107
Target Start/End: Complemental strand, 8424971 - 8424896
Alignment:
Q  32 ttagaaatcatggttgagtttaacacaatctcacaaaactgtcttgtgcgatgaagattgttcccacttataaata 107  Q
    ||||||||| |||||||| ||||||||| | ||||||||||  ||||| | ||| |||||  ||||||||||||||    
T  8424971 ttagaaatcgtggttgagcttaacacaaccccacaaaactggtttgtgaggtgatgattgcccccacttataaata 8424896  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 17854693 - 17854766
Alignment:
Q  32 ttagaaatcatggttgagtttaacacaatctcacaaaactgtcttgtgcgatgaagattgttcccacttataaa 105  Q
    ||||||||| |||||| |  |||||||||| |||||||| | |||||| ||||| |||||  ||||||||||||    
T  17854693 ttagaaatcgtggttgggcctaacacaatcccacaaaaccgacttgtgagatgatgattgcccccacttataaa 17854766  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 18209071 - 18208998
Alignment:
Q  32 ttagaaatcatggttgagtttaacacaatctcacaaaactgtcttgtgcgatgaagattgttcccacttataaa 105  Q
    |||||||||||||||||| ||||||||| ||||| |||| | ||| || | ||| ||||| ||||| |||||||    
T  18209071 ttagaaatcatggttgagcttaacacaacctcacgaaaccgacttatgaggtgatgattgctcccatttataaa 18208998  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 115
Target Start/End: Original strand, 12592731 - 12592805
Alignment:
Q  41 atggttgagtttaacacaatctcacaaaactgtcttgtgcgatgaagattgttcccacttataaatatttattca 115  Q
    ||||||||||||||||||||| |||| || ||  |||||  ||||| ||| | ||||||||||||||| ||||||    
T  12592731 atggttgagtttaacacaatcacacataattggtttgtgatatgaaaattatccccacttataaatatatattca 12592805  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 25258302 - 25258375
Alignment:
Q  32 ttagaaatcatggttgagtttaacacaatctcacaaaactgtcttgtgcgatgaagattgttcccacttataaa 105  Q
    ||||||||| |||||||||||||||||| | |||||||| | |||||| | ||| |||||  |||||| |||||    
T  25258302 ttagaaatcgtggttgagtttaacacaaccccacaaaaccgacttgtgaggtgaggattgcccccactgataaa 25258375  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 25322092 - 25322165
Alignment:
Q  32 ttagaaatcatggttgagtttaacacaatctcacaaaactgtcttgtgcgatgaagattgttcccacttataaa 105  Q
    ||||||||| |||||||||||||||||| | |||||||| | |||||| | ||| |||||  |||||| |||||    
T  25322092 ttagaaatcgtggttgagtttaacacaaccccacaaaaccgacttgtgaggtgaggattgcccccactgataaa 25322165  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 1564568 - 1564640
Alignment:
Q  32 ttagaaatcatggttgagtttaacacaatctcacaaaactgtcttgtgcgatgaagattgttcccacttataa 104  Q
    ||||||||| ||||||||  |||||||| | |||||||||||||||||   ||| |||||  |||||||||||    
T  1564568 ttagaaatcgtggttgagcctaacacaaccccacaaaactgtcttgtgatgtgaggattgcccccacttataa 1564640  T

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Target: scaffold0481 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 3472 - 3545
Alignment:
Q  32 ttagaaatcatggttgagtttaacacaatctcacaaaactgtcttgtgcgatgaagattgttcccacttataaa 105  Q
    ||||||||| || ||| || |||||||| | |||||||| | |||||| | |||||||||| ||||||||||||    
T  3472 ttagaaatcgtgattgggtctaacacaaccccacaaaaccggcttgtgaggtgaagattgtccccacttataaa 3545  T

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Target: scaffold0334 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 105
Target Start/End: Original strand, 4431 - 4503
Alignment:
Q  33 tagaaatcatggttgagtttaacacaatctcacaaaactgtcttgtgcgatgaagattgttcccacttataaa 105  Q
    |||||||||||||||||  |||||||| | |||||||| | |||||| | ||| |||||  ||||||||||||    
T  4431 tagaaatcatggttgagcctaacacaaccccacaaaaccggcttgtgaggtgaggattgcccccacttataaa 4503  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 108
Target Start/End: Complemental strand, 24554200 - 24554124
Alignment:
Q  32 ttagaaatcatggttgagtttaacacaatctcacaaaactgtcttgtgcgatgaagattgttcccacttataaatat 108  Q
    |||||||| |||||||||  ||||||||   |||||||| | |||||| | |||||||||  |||||||||||||||    
T  24554200 ttagaaattatggttgagactaacacaactccacaaaaccggcttgtgaggtgaagattgcccccacttataaatat 24554124  T

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