View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10373_low_1 (Length: 1264)

Name: NF10373_low_1
Description: NF10373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10373_low_1
NF10373_low_1
[»] chr3 (13 HSPs)
chr3 (16-1233)||(2968517-2969740)
chr3 (619-661)||(40390353-40390395)
chr3 (623-661)||(516528-516566)
chr3 (623-661)||(4495679-4495717)
chr3 (623-661)||(10484619-10484657)
chr3 (623-661)||(13628793-13628831)
chr3 (623-661)||(26573243-26573281)
chr3 (623-661)||(40272815-40272853)
chr3 (623-661)||(43956475-43956513)
chr3 (623-661)||(45288058-45288096)
chr3 (623-661)||(47624215-47624253)
chr3 (623-661)||(54032574-54032612)
chr3 (623-661)||(54484807-54484845)
[»] chr1 (14 HSPs)
chr1 (623-660)||(35019346-35019383)
chr1 (623-658)||(30555232-30555267)
chr1 (619-661)||(50760243-50760285)
chr1 (623-655)||(18741966-18741998)
chr1 (626-661)||(39802731-39802766)
chr1 (623-661)||(4349755-4349793)
chr1 (623-661)||(10378738-10378776)
chr1 (623-661)||(15511151-15511189)
chr1 (623-661)||(20999853-20999891)
chr1 (623-661)||(22325010-22325048)
chr1 (619-661)||(25554745-25554787)
chr1 (623-661)||(28894561-28894599)
chr1 (623-661)||(45402213-45402251)
chr1 (624-661)||(10668345-10668382)
[»] chr7 (4 HSPs)
chr7 (621-661)||(18747579-18747619)
chr7 (623-661)||(11458267-11458305)
chr7 (619-657)||(21566526-21566564)
chr7 (623-661)||(36602541-36602579)
[»] chr4 (12 HSPs)
chr4 (619-661)||(35567260-35567302)
chr4 (623-661)||(11394946-11394984)
chr4 (623-661)||(11404673-11404711)
chr4 (623-661)||(20639661-20639699)
chr4 (619-661)||(20908639-20908681)
chr4 (623-661)||(30690179-30690217)
chr4 (623-661)||(35532086-35532124)
chr4 (623-661)||(38755911-38755949)
chr4 (623-661)||(40553940-40553978)
chr4 (623-661)||(44363133-44363171)
chr4 (623-661)||(54175159-54175197)
chr4 (627-661)||(55766469-55766503)
[»] chr2 (11 HSPs)
chr2 (619-661)||(25249741-25249783)
chr2 (623-655)||(23488577-23488609)
chr2 (623-661)||(9671273-9671311)
chr2 (623-661)||(10543794-10543832)
chr2 (623-661)||(10546257-10546295)
chr2 (623-661)||(14530414-14530452)
chr2 (623-661)||(22371206-22371244)
chr2 (623-661)||(25079720-25079758)
chr2 (623-661)||(40416874-40416912)
chr2 (623-661)||(44643617-44643655)
chr2 (623-660)||(124918-124955)
[»] chr8 (7 HSPs)
chr8 (619-655)||(27508000-27508036)
chr8 (623-654)||(389739-389770)
chr8 (623-661)||(12625984-12626022)
chr8 (623-661)||(27468095-27468133)
chr8 (623-661)||(35261773-35261811)
chr8 (623-661)||(39460997-39461035)
chr8 (623-660)||(18164764-18164801)
[»] scaffold0057 (1 HSPs)
scaffold0057 (623-661)||(46925-46963)
[»] chr6 (2 HSPs)
chr6 (623-661)||(10734908-10734946)
chr6 (623-661)||(29355858-29355896)
[»] chr5 (4 HSPs)
chr5 (619-661)||(7097763-7097805)
chr5 (623-657)||(13774959-13774993)
chr5 (623-661)||(16957408-16957446)
chr5 (623-661)||(38879677-38879715)


Alignment Details
Target: chr3 (Bit Score: 1022; Significance: 0; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 1022; E-Value: 0
Query Start/End: Original strand, 16 - 1233
Target Start/End: Original strand, 2968517 - 2969740
Alignment:
Q  16 aataatgcatatgatacatgcatttgttgtacttcattacgcagttacacaagagataatttcaatcgttaatttaagatcggacaactaagattataca 115  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2968517 aataatgtatatgatacatgcatttgttgtacttcattacgcagttacacaagagataatttcaatcgttaatttaagatcggacaactaatattataca 2968616  T
Q  116 tttaccaaatcaacattgaataatctgtaactgatttagataggaactgtccatgataggacagttgagatccgtaattgcattacacaaggaatctgat 215  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  2968617 tttaccaaatcaacattgaataatctgtgactgatttagataggaactgtccatgataggacagttgagatccgtaactgcattacacaaggaatgtgat 2968716  T
Q  216 ttcaggatacatccaatatccttggtgcaaatttagcaactattt------------ccaatcttaatccttccgtctcttttttcttctaagttttaag 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||| |||||||||||||||||||||||||    
T  2968717 ttcaggatacatccaatatccttggtgcaaatttagcaactattttcatgtctatttccaatcttaatccttccctctcttttttcttctaagttttaag 2968816  T
Q  304 ggttgtaataaaaataaactttgctgaaactatagtttttatcttttatcttcattgaatctgaaagaaacaagtattgcttcatcccatttgccaacat 403  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2968817 ggttgttataaaaataaactttgctgaaactatagtttttatcttttatcttcattgaatctgaaagaaacaagtattgcttcatcccatttgccaacat 2968916  T
Q  404 cagaaggtgaaaatttgatgattattttcaagaaaagcctttcaaacatgtcacacaaatatattttattgatagtgtgaaacactaattaagacaatac 503  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  2968917 cagaaggtgaaaatttgatgattattttcaagaaaagcctttcaaacatgtcaca--aatatattttattgatagtgtgaaacactaattaagacaatac 2969014  T
Q  504 aaggctccacaagtttacctaaactcattctatcacaaaggaaccacttcaacactataattaaagtggagagtttannnnnnnaatgatcttaactgaa 603  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||       ||||||||||||||||    
T  2969015 aaggctccacaagtttacctaaactcattctatcacaaaggtaccacttcaacactataattaaagtggagagtttatttttt-aatgatcttaactgaa 2969113  T
Q  604 atactccaaagtgcaccgaaccctgcgtatgcgagagctttagtgcaccgggctgcccctgccctgcccttaactgaaatactctcttgttttttctttt 703  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2969114 atactccaaagtgcaccgaagcctgcgtaggcgagagctttagtgcaccgggctgcccctgccctgcccttaactgaaatactctcttgttttttctttt 2969213  T
Q  704 atagccttttagtaacatctaagaattgagtaaacccattttatatgttggcatttctctgttactttcattatgtgcttcataatcactagattcatca 803  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||| ||||||||   ||||||||||||||||||||||||||||||    
T  2969214 atagccttttagtaccatctaagagttgagtaaacccattttatatgtaggcatttctgtgttacttctgttatgtgcttcataatcactagattcatca 2969313  T
Q  804 gaaaactgaaatgagtttgagccacttgaacaaatgattttaatgggaggggatggtggctgcctcacagtcatatgcctcatctgacttatgtattcat 903  Q
    ||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2969314 gaaaactgaaatgagcttgagccacttgaacagatgcttttaatgggaggggatggtggctgcctcacagtcatatgcctcatctgacttatgtattcat 2969413  T
Q  904 tgctttctgtagattctgatatagtgctcagtaattcaccttgctcaaagggtccattctcatcttcattttcatcaaattctgattcactataggatga 1003  Q
    |||||||||| |||||||| ||||| || |||||||||||||||||||||||| ||||||||   |||||||||||||||||||||||||||||||||||    
T  2969414 tgctttctgtggattctgaaatagttcttagtaattcaccttgctcaaagggttcattctca---tcattttcatcaaattctgattcactataggatga 2969510  T
Q  1004 atctgatcttgctggggagtaatctcctgttccaatgtcacatgtgttgccttccgatatgtccgtcaaagcattaacaacctgttgtgatcacggaaat 1103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  2969511 atctgatcttgctggggagtaatctcctgttccaatgtcacatgtgttgccttccgatatgtccgtcaaagcattaacaacctgttgtgatcacggaaaa 2969610  T
Q  1104 gtaatacttaaaagtcgggtcatgctttgttgatcatgaatgtcatatgtaaggaaaagatgatatatgtttacttagctatgcaattaagtcattaata 1203  Q
    ||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2969611 gtaatacttaaaaatccggtcatgctttgttgatcatgaatgttatatgtaaggaaaagatgatatatgtttacttagctatgcaattaagtcattaata 2969710  T
Q  1204 tttgtttacttaccgcaaccatacttagtc 1233  Q
    ||||||||||||||||||||||||||||||    
T  2969711 tttgtttacttaccgcaaccatacttagtc 2969740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 619 - 661
Target Start/End: Original strand, 40390353 - 40390395
Alignment:
Q  619 ccgaaccctgcgtatgcgagagctttagtgcaccgggctgccc 661  Q
    |||||||||||||||||| |||||||||||||||||| |||||    
T  40390353 ccgaaccctgcgtatgcgggagctttagtgcaccgggttgccc 40390395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 623 - 661
Target Start/End: Original strand, 516528 - 516566
Alignment:
Q  623 accctgcgtatgcgagagctttagtgcaccgggctgccc 661  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  516528 accctgcgtatgcgggagctttagtgcaccgggttgccc 516566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 623 - 661
Target Start/End: Complemental strand, 4495717 - 4495679
Alignment:
Q  623 accctgcgtatgcgagagctttagtgcaccgggctgccc 661  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  4495717 accctgcgtatgcgggagctttagtgcaccgggttgccc 4495679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 623 - 661
Target Start/End: Complemental strand, 10484657 - 10484619
Alignment:
Q  623 accctgcgtatgcgagagctttagtgcaccgggctgccc 661  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  10484657 accctgcgtatgcgggagctttagtgcaccgggttgccc 10484619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 623 - 661
Target Start/End: Complemental strand, 13628831 - 13628793
Alignment:
Q  623 accctgcgtatgcgagagctttagtgcaccgggctgccc 661  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  13628831 accctgcgtatgcgggagctttagtgcaccgggttgccc 13628793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 623 - 661
Target Start/End: Original strand, 26573243 - 26573281
Alignment:
Q  623 accctgcgtatgcgagagctttagtgcaccgggctgccc 661  Q
    |||||||||||||| ||||||||||||||| ||||||||    
T  26573243 accctgcgtatgcgtgagctttagtgcaccaggctgccc 26573281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 623 - 661
Target Start/End: Complemental strand, 40272853 - 40272815
Alignment:
Q  623 accctgcgtatgcgagagctttagtgcaccgggctgccc 661  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  40272853 accctgcgtatgcgggagctttagtgcaccgggttgccc 40272815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 623 - 661
Target Start/End: Complemental strand, 43956513 - 43956475
Alignment:
Q  623 accctgcgtatgcgagagctttagtgcaccgggctgccc 661  Q
    |||| ||||||||| ||||||||||||||||||||||||    
T  43956513 acccagcgtatgcgggagctttagtgcaccgggctgccc 43956475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 623 - 661
Target Start/End: Complemental strand, 45288096 - 45288058
Alignment:
Q  623 accctgcgtatgcgagagctttagtgcaccgggctgccc 661  Q
    ||||||||||||| |||||||||||||||| ||||||||    
T  45288096 accctgcgtatgcaagagctttagtgcaccaggctgccc 45288058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 623 - 661
Target Start/End: Original strand, 47624215 - 47624253
Alignment:
Q  623 accctgcgtatgcgagagctttagtgcaccgggctgccc 661  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  47624215 accctgcgtatgcgggagctttagtgcaccgggttgccc 47624253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 623 - 661
Target Start/End: Complemental strand, 54032612 - 54032574
Alignment:
Q  623 accctgcgtatgcgagagctttagtgcaccgggctgccc 661  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  54032612 accctgcgtatgcgggagctttagtgcaccgggttgccc 54032574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 623 - 661
Target Start/End: Original strand, 54484807 - 54484845
Alignment:
Q  623 accctgcgtatgcgagagctttagtgcaccgggctgccc 661  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  54484807 accctgcgtatgcgggagctttagtgcaccgggttgccc 54484845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000008; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 623 - 660
Target Start/End: Original strand, 35019346 - 35019383
Alignment:
Q  623 accctgcgtatgcgagagctttagtgcaccgggctgcc 660  Q
    ||||||||||||||||||||||||||||||||||||||    
T  35019346 accctgcgtatgcgagagctttagtgcaccgggctgcc 35019383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 623 - 658
Target Start/End: Original strand, 30555232 - 30555267
Alignment:
Q  623 accctgcgtatgcgagagctttagtgcaccgggctg 658  Q
    ||||||||||||||||||||||||||||||||||||    
T  30555232 accctgcgtatgcgagagctttagtgcaccgggctg 30555267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 619 - 661
Target Start/End: Complemental strand, 50760285 - 50760243
Alignment:
Q  619 ccgaaccctgcgtatgcgagagctttagtgcaccgggctgccc 661  Q
    |||||||||||||||||| |||||||| |||||||||||||||    
T  50760285 ccgaaccctgcgtatgcgggagctttaatgcaccgggctgccc 50760243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 623 - 655
Target Start/End: Complemental strand, 18741998 - 18741966
Alignment:
Q  623 accctgcgtatgcgagagctttagtgcaccggg 655  Q
    |||||||||||||||||||||||||||||||||    
T  18741998 accctgcgtatgcgagagctttagtgcaccggg 18741966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 626 - 661
Target Start/End: Complemental strand, 39802766 - 39802731
Alignment:
Q  626 ctgcgtatgcgagagctttagtgcaccgggctgccc 661  Q
    |||||||||| |||||||||||||||||||||||||    
T  39802766 ctgcgtatgcaagagctttagtgcaccgggctgccc 39802731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 623 - 661
Target Start/End: Original strand, 4349755 - 4349793
Alignment:
Q  623 accctgcgtatgcgagagctttagtgcaccgggctgccc 661  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  4349755 accctgcgtatgcgggagctttagtgcaccgggttgccc 4349793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 623 - 661
Target Start/End: Complemental strand, 10378776 - 10378738
Alignment:
Q  623 accctgcgtatgcgagagctttagtgcaccgggctgccc 661  Q
    ||||||| |||||| ||||||||||||||||||||||||    
T  10378776 accctgcatatgcgggagctttagtgcaccgggctgccc 10378738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 623 - 661
Target Start/End: Complemental strand, 15511189 - 15511151
Alignment:
Q  623 accctgcgtatgcgagagctttagtgcaccgggctgccc 661  Q
    |||||||||||| | ||||||||||||||||||||||||    
T  15511189 accctgcgtatgtgtgagctttagtgcaccgggctgccc 15511151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 623 - 661
Target Start/End: Complemental strand, 20999891 - 20999853
Alignment:
Q  623 accctgcgtatgcgagagctttagtgcaccgggctgccc 661  Q
    |||||||||| ||| ||||||||||||||||||||||||    
T  20999891 accctgcgtacgcgggagctttagtgcaccgggctgccc 20999853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 623 - 661
Target Start/End: Original strand, 22325010 - 22325048
Alignment:
Q  623 accctgcgtatgcgagagctttagtgcaccgggctgccc 661  Q
    |||||||||||||| ||||||||||||||| ||||||||    
T  22325010 accctgcgtatgcgggagctttagtgcaccaggctgccc 22325048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 619 - 661
Target Start/End: Complemental strand, 25554787 - 25554745
Alignment:
Q  619 ccgaaccctgcgtatgcgagagctttagtgcaccgggctgccc 661  Q
    |||||||||||||||||| |||| |||||||||||| ||||||    
T  25554787 ccgaaccctgcgtatgcgggagcattagtgcaccggactgccc 25554745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 623 - 661
Target Start/End: Complemental strand, 28894599 - 28894561
Alignment:
Q  623 accctgcgtatgcgagagctttagtgcaccgggctgccc 661  Q
    ||||||| |||||||||||||||||||||| ||||||||    
T  28894599 accctgcatatgcgagagctttagtgcaccaggctgccc 28894561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 623 - 661
Target Start/End: Original strand, 45402213 - 45402251
Alignment:
Q  623 accctgcgtatgcgagagctttagtgcaccgggctgccc 661  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  45402213 accctgcgtatgcgggagctttagtgcaccgggttgccc 45402251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 624 - 661
Target Start/End: Original strand, 10668345 - 10668382
Alignment:
Q  624 ccctgcgtatgcgagagctttagtgcaccgggctgccc 661  Q
    ||||||||||||| |||||||||||||||||| |||||    
T  10668345 ccctgcgtatgcgggagctttagtgcaccgggttgccc 10668382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 621 - 661
Target Start/End: Original strand, 18747579 - 18747619
Alignment:
Q  621 gaaccctgcgtatgcgagagctttagtgcaccgggctgccc 661  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  18747579 gaaccctgcgtatgcgggagctttagtgcaccgggctgccc 18747619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 623 - 661
Target Start/End: Complemental strand, 11458305 - 11458267
Alignment:
Q  623 accctgcgtatgcgagagctttagtgcaccgggctgccc 661  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  11458305 accctgcgtatgcaagagctttagtgcaccgggctgccc 11458267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 619 - 657
Target Start/End: Original strand, 21566526 - 21566564
Alignment:
Q  619 ccgaaccctgcgtatgcgagagctttagtgcaccgggct 657  Q
    ||||||||||| |||||| ||||||||||||||||||||    
T  21566526 ccgaaccctgcatatgcgggagctttagtgcaccgggct 21566564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 623 - 661
Target Start/End: Original strand, 36602541 - 36602579
Alignment:
Q  623 accctgcgtatgcgagagctttagtgcaccgggctgccc 661  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  36602541 accctgcgtatgcgggagctttagtgcaccgggttgccc 36602579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000005; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 619 - 661
Target Start/End: Original strand, 35567260 - 35567302
Alignment:
Q  619 ccgaaccctgcgtatgcgagagctttagtgcaccgggctgccc 661  Q
    ||||||||||||| |||| ||||||||||||||||||||||||    
T  35567260 ccgaaccctgcgtctgcgggagctttagtgcaccgggctgccc 35567302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 623 - 661
Target Start/End: Original strand, 11394946 - 11394984
Alignment:
Q  623 accctgcgtatgcgagagctttagtgcaccgggctgccc 661  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  11394946 accctgcgtatgcgggagctttagtgcaccgggttgccc 11394984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 623 - 661
Target Start/End: Original strand, 11404673 - 11404711
Alignment:
Q  623 accctgcgtatgcgagagctttagtgcaccgggctgccc 661  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  11404673 accctgcgtatgcgggagctttagtgcaccgggttgccc 11404711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 623 - 661
Target Start/End: Complemental strand, 20639699 - 20639661
Alignment:
Q  623 accctgcgtatgcgagagctttagtgcaccgggctgccc 661  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  20639699 accctgcgtatgcgggagctttagtgcaccgggttgccc 20639661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 619 - 661
Target Start/End: Complemental strand, 20908681 - 20908639
Alignment:
Q  619 ccgaaccctgcgtatgcgagagctttagtgcaccgggctgccc 661  Q
    |||||||||||||||||| ||||||||||||||  ||||||||    
T  20908681 ccgaaccctgcgtatgcgggagctttagtgcacaaggctgccc 20908639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 623 - 661
Target Start/End: Complemental strand, 30690217 - 30690179
Alignment:
Q  623 accctgcgtatgcgagagctttagtgcaccgggctgccc 661  Q
    |||||||||||||| ||||||||||||||| ||||||||    
T  30690217 accctgcgtatgcgggagctttagtgcaccaggctgccc 30690179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 623 - 661
Target Start/End: Original strand, 35532086 - 35532124
Alignment:
Q  623 accctgcgtatgcgagagctttagtgcaccgggctgccc 661  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  35532086 accctgcgtatgcgggagctttagtgcaccgggttgccc 35532124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 623 - 661
Target Start/End: Complemental strand, 38755949 - 38755911
Alignment:
Q  623 accctgcgtatgcgagagctttagtgcaccgggctgccc 661  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  38755949 accctgcgtatgcgggagctttagtgcaccgggttgccc 38755911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 623 - 661
Target Start/End: Complemental strand, 40553978 - 40553940
Alignment:
Q  623 accctgcgtatgcgagagctttagtgcaccgggctgccc 661  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  40553978 accctgcgtatgcgggagctttagtgcaccgggttgccc 40553940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 623 - 661
Target Start/End: Complemental strand, 44363171 - 44363133
Alignment:
Q  623 accctgcgtatgcgagagctttagtgcaccgggctgccc 661  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  44363171 accctgcgtatgcgggagctttagtgcaccgggttgccc 44363133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 623 - 661
Target Start/End: Original strand, 54175159 - 54175197
Alignment:
Q  623 accctgcgtatgcgagagctttagtgcaccgggctgccc 661  Q
    ||||||| |||||| ||||||||||||||||||||||||    
T  54175159 accctgcatatgcgggagctttagtgcaccgggctgccc 54175197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 627 - 661
Target Start/End: Complemental strand, 55766503 - 55766469
Alignment:
Q  627 tgcgtatgcgagagctttagtgcaccgggctgccc 661  Q
    ||||||||||||||||||||||||||||| |||||    
T  55766503 tgcgtatgcgagagctttagtgcaccgggatgccc 55766469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000005; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 619 - 661
Target Start/End: Complemental strand, 25249783 - 25249741
Alignment:
Q  619 ccgaaccctgcgtatgcgagagctttagtgcaccgggctgccc 661  Q
    |||||||||||||||||| |||||||||||||||||| |||||    
T  25249783 ccgaaccctgcgtatgcgtgagctttagtgcaccgggttgccc 25249741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 623 - 655
Target Start/End: Original strand, 23488577 - 23488609
Alignment:
Q  623 accctgcgtatgcgagagctttagtgcaccggg 655  Q
    |||||||||||||||||||||||||||||||||    
T  23488577 accctgcgtatgcgagagctttagtgcaccggg 23488609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 623 - 661
Target Start/End: Original strand, 9671273 - 9671311
Alignment:
Q  623 accctgcgtatgcgagagctttagtgcaccgggctgccc 661  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  9671273 accctgcgtatgcgggagctttagtgcaccgggttgccc 9671311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 623 - 661
Target Start/End: Original strand, 10543794 - 10543832
Alignment:
Q  623 accctgcgtatgcgagagctttagtgcaccgggctgccc 661  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  10543794 accctgcgtatgcgggagctttagtgcaccgggttgccc 10543832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 623 - 661
Target Start/End: Original strand, 10546257 - 10546295
Alignment:
Q  623 accctgcgtatgcgagagctttagtgcaccgggctgccc 661  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  10546257 accctgcgtatgcgggagctttagtgcaccgggttgccc 10546295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 623 - 661
Target Start/End: Original strand, 14530414 - 14530452
Alignment:
Q  623 accctgcgtatgcgagagctttagtgcaccgggctgccc 661  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  14530414 accctgcgtatgcgggagctttagtgcaccgggttgccc 14530452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 623 - 661
Target Start/End: Original strand, 22371206 - 22371244
Alignment:
Q  623 accctgcgtatgcgagagctttagtgcaccgggctgccc 661  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  22371206 accctgcgtatgcgggagctttagtgcaccgggttgccc 22371244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 623 - 661
Target Start/End: Complemental strand, 25079758 - 25079720
Alignment:
Q  623 accctgcgtatgcgagagctttagtgcaccgggctgccc 661  Q
    ||||||||||||| ||||||||||||||||||| |||||    
T  25079758 accctgcgtatgcaagagctttagtgcaccgggttgccc 25079720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 623 - 661
Target Start/End: Complemental strand, 40416912 - 40416874
Alignment:
Q  623 accctgcgtatgcgagagctttagtgcaccgggctgccc 661  Q
    ||||||| ||||||||||||||||||||||||| |||||    
T  40416912 accctgcatatgcgagagctttagtgcaccgggttgccc 40416874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 623 - 661
Target Start/End: Original strand, 44643617 - 44643655
Alignment:
Q  623 accctgcgtatgcgagagctttagtgcaccgggctgccc 661  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  44643617 accctgcgtatgcgggagccttagtgcaccgggctgccc 44643655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 623 - 660
Target Start/End: Complemental strand, 124955 - 124918
Alignment:
Q  623 accctgcgtatgcgagagctttagtgcaccgggctgcc 660  Q
    |||||||||||||| |||||||||||||||||| ||||    
T  124955 accctgcgtatgcgggagctttagtgcaccgggttgcc 124918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000007; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 619 - 655
Target Start/End: Original strand, 27508000 - 27508036
Alignment:
Q  619 ccgaaccctgcgtatgcgagagctttagtgcaccggg 655  Q
    |||||||||||||||||| ||||||||||||||||||    
T  27508000 ccgaaccctgcgtatgcgggagctttagtgcaccggg 27508036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 623 - 654
Target Start/End: Original strand, 389739 - 389770
Alignment:
Q  623 accctgcgtatgcgagagctttagtgcaccgg 654  Q
    ||||||||||||||||||||||||||||||||    
T  389739 accctgcgtatgcgagagctttagtgcaccgg 389770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 623 - 661
Target Start/End: Original strand, 12625984 - 12626022
Alignment:
Q  623 accctgcgtatgcgagagctttagtgcaccgggctgccc 661  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  12625984 accctgcgtatgcgggagctttagtgcaccgggttgccc 12626022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 623 - 661
Target Start/End: Complemental strand, 27468133 - 27468095
Alignment:
Q  623 accctgcgtatgcgagagctttagtgcaccgggctgccc 661  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  27468133 accctgcgtatgcgggagctttagtgcaccgggttgccc 27468095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 623 - 661
Target Start/End: Original strand, 35261773 - 35261811
Alignment:
Q  623 accctgcgtatgcgagagctttagtgcaccgggctgccc 661  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  35261773 accctgcgtatgcgggagctttagtgcaccgggttgccc 35261811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 623 - 661
Target Start/End: Complemental strand, 39461035 - 39460997
Alignment:
Q  623 accctgcgtatgcgagagctttagtgcaccgggctgccc 661  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  39461035 accctgcgtatgcgggagctttagtgcaccgggttgccc 39460997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 623 - 660
Target Start/End: Complemental strand, 18164801 - 18164764
Alignment:
Q  623 accctgcgtatgcgagagctttagtgcaccgggctgcc 660  Q
    |||||||||||||| |||||||||||||||||| ||||    
T  18164801 accctgcgtatgcgggagctttagtgcaccgggttgcc 18164764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 623 - 661
Target Start/End: Original strand, 46925 - 46963
Alignment:
Q  623 accctgcgtatgcgagagctttagtgcaccgggctgccc 661  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  46925 accctgcgtatgcgggagctttagtgcaccgggttgccc 46963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 623 - 661
Target Start/End: Complemental strand, 10734946 - 10734908
Alignment:
Q  623 accctgcgtatgcgagagctttagtgcaccgggctgccc 661  Q
    |||||||||||||| |||||||||| |||||||||||||    
T  10734946 accctgcgtatgcgggagctttagtccaccgggctgccc 10734908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 623 - 661
Target Start/End: Complemental strand, 29355896 - 29355858
Alignment:
Q  623 accctgcgtatgcgagagctttagtgcaccgggctgccc 661  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  29355896 accctgcgtatgcgggagctttagtgcaccgggttgccc 29355858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.0000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 619 - 661
Target Start/End: Complemental strand, 7097805 - 7097763
Alignment:
Q  619 ccgaaccctgcgtatgcgagagctttagtgcaccgggctgccc 661  Q
    |||||||||||||||||| |||||||||||||||  |||||||    
T  7097805 ccgaaccctgcgtatgcgggagctttagtgcaccatgctgccc 7097763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 623 - 657
Target Start/End: Original strand, 13774959 - 13774993
Alignment:
Q  623 accctgcgtatgcgagagctttagtgcaccgggct 657  Q
    |||||||||||||| ||||||||||||||||||||    
T  13774959 accctgcgtatgcgggagctttagtgcaccgggct 13774993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 623 - 661
Target Start/End: Original strand, 16957408 - 16957446
Alignment:
Q  623 accctgcgtatgcgagagctttagtgcaccgggctgccc 661  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  16957408 accctgcgtatgcgggagctttagtgcaccgggttgccc 16957446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 623 - 661
Target Start/End: Original strand, 38879677 - 38879715
Alignment:
Q  623 accctgcgtatgcgagagctttagtgcaccgggctgccc 661  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  38879677 accctgcgtatgcgggagctttagtgcaccgggttgccc 38879715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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