View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10373_low_11 (Length: 297)

Name: NF10373_low_11
Description: NF10373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10373_low_11
NF10373_low_11
[»] chr7 (9 HSPs)
chr7 (20-228)||(29098537-29098751)
chr7 (15-70)||(3617388-3617443)
chr7 (15-70)||(29058081-29058136)
chr7 (15-70)||(29071309-29071364)
chr7 (16-70)||(28957011-28957065)
chr7 (219-283)||(29098920-29098984)
chr7 (16-70)||(29110793-29110847)
chr7 (16-69)||(29078043-29078096)
chr7 (18-70)||(29068847-29068899)
[»] chr4 (2 HSPs)
chr4 (15-70)||(11851808-11851863)
chr4 (18-70)||(11854525-11854577)


Alignment Details
Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 20 - 228
Target Start/End: Original strand, 29098537 - 29098751
Alignment:
Q  20 tgcctcaaaatcaatggggtggccttgatatta---catggtcagatgcttgatgttgctgaagttgggaatttaatttctggttttgtttctata-ttg 115  Q
    ||||||||||||||||||||||||||||||| |   |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||    
T  29098537 tgcctcaaaatcaatggggtggccttgatatcatcacatggtcagatgcttgatgttgctgaagttgggaattttatttctggttttgtttctatatttg 29098636  T
Q  116 taattagttcatttttgcgaacnnnnnnnctctctttagtgtttcatgtgtatgtcgttctattgtaaaattatgaac---ttttatacatactattttc 212  Q
    ||||||||||| ||||||||||       |||||||||||||||||||||||| ||||||||||||||||||||||||   |||||||||||||||||||    
T  29098637 taattagttca-ttttgcgaactttttttctctctttagtgtttcatgtgtatatcgttctattgtaaaattatgaactttttttatacatactattttc 29098735  T
Q  213 acacgtatatatcaaa 228  Q
    ||||||||| ||||||    
T  29098736 acacgtatacatcaaa 29098751  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 3617443 - 3617388
Alignment:
Q  15 gggtgtgcctcaaaatcaatggggtggccttgatattacatggtcagatgcttgat 70  Q
    ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  3617443 gggtgtgcctcaagatcaatggggtggcctagatattacatggtcagatgcttgat 3617388  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 29058136 - 29058081
Alignment:
Q  15 gggtgtgcctcaaaatcaatggggtggccttgatattacatggtcagatgcttgat 70  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  29058136 gggtgtgcctcaagatcaatggggtggccttgacattacatggtcagatgcttgat 29058081  T

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Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 29071364 - 29071309
Alignment:
Q  15 gggtgtgcctcaaaatcaatggggtggccttgatattacatggtcagatgcttgat 70  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  29071364 gggtgtgcctcaagatcaatggggtggccttgacattacatggtcagatgcttgat 29071309  T

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Target: chr7; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 28957011 - 28957065
Alignment:
Q  16 ggtgtgcctcaaaatcaatggggtggccttgatattacatggtcagatgcttgat 70  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  28957011 ggtgtgcctcaagatcaatggggtggccttgacattacatggtcagatgcttgat 28957065  T

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Target: chr7; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 219 - 283
Target Start/End: Original strand, 29098920 - 29098984
Alignment:
Q  219 atatatcaaatcctaaactaactatttccctcgttcaaacccnnnnnnnatagaccataaatatt 283  Q
    ||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||    
T  29098920 atatatcaaatcctaaactaactatttccctcgttcaaaccctttttttatagaccataaatatt 29098984  T

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Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 29110847 - 29110793
Alignment:
Q  16 ggtgtgcctcaaaatcaatggggtggccttgatattacatggtcagatgcttgat 70  Q
    ||||||||| || | ||||||||||| ||||||||||||||||||||||||||||    
T  29110847 ggtgtgcctaaagaacaatggggtggtcttgatattacatggtcagatgcttgat 29110793  T

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Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 29078096 - 29078043
Alignment:
Q  16 ggtgtgcctcaaaatcaatggggtggccttgatattacatggtcagatgcttga 69  Q
    ||||||||| || | ||||||||||||||||| |||||||||||||||||||||    
T  29078096 ggtgtgcctaaagaacaatggggtggccttgacattacatggtcagatgcttga 29078043  T

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Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 29068899 - 29068847
Alignment:
Q  18 tgtgcctcaaaatcaatggggtggccttgatattacatggtcagatgcttgat 70  Q
    ||||||| || | ||||||||||||||||| ||||||||||||||||||||||    
T  29068899 tgtgcctaaagagcaatggggtggccttgacattacatggtcagatgcttgat 29068847  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 11851808 - 11851863
Alignment:
Q  15 gggtgtgcctcaaaatcaatggggtggccttgatattacatggtcagatgcttgat 70  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  11851808 gggtgtgcctcaagatcaatggggtggccttgacattacatggtcagatgcttgat 11851863  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 11854525 - 11854577
Alignment:
Q  18 tgtgcctcaaaatcaatggggtggccttgatattacatggtcagatgcttgat 70  Q
    ||||||| || | ||||||||||||||||| ||||||||||||||||||||||    
T  11854525 tgtgcctaaagagcaatggggtggccttgacattacatggtcagatgcttgat 11854577  T

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