View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10373_low_12 (Length: 291)
Name: NF10373_low_12
Description: NF10373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10373_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 9 - 273
Target Start/End: Original strand, 33441842 - 33442106
Alignment:
| Q |
9 |
agcagagatcgacgggggacaccactagcaggccatggtgaactcgaaggtggtgcttcaggtgtcgccaggtcaagtgatggtgatggagaaggtgaag |
108 |
Q |
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| T |
33441842 |
agcagggatcgacggggaacgctactagcaggccatggtgcattcgaaggcggtgcttcaggtgtcaccaggtcaagtgatggtgatggagaaggtgaag |
33441941 |
T |
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| Q |
109 |
gtactggagaccaaccatcttgttttggctgcacagttatgaaaagcttttgtccattttcgcagtgatcggtaacacttgaaatgtaccatcttctccc |
208 |
Q |
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| T |
33441942 |
gtactggagaccaaccatcttgttttggctgcacagttatgaaaagcttttgtccattttcgcagtgatcggtaacacttgaaatgtaccatcttctccc |
33442041 |
T |
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| Q |
209 |
ataggttgtaattataattttatcttgtccactagttaacacaggtgctgtcgaaggaactgagc |
273 |
Q |
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| T |
33442042 |
ataggttgtaattataattttgtcttgcccactggttaacacaggtgctgtcaaaggaactgagc |
33442106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 9 - 273
Target Start/End: Original strand, 33452062 - 33452326
Alignment:
| Q |
9 |
agcagagatcgacgggggacaccactagcaggccatggtgaactcgaaggtggtgcttcaggtgtcgccaggtcaagtgatggtgatggagaaggtgaag |
108 |
Q |
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| T |
33452062 |
agcagggatcgacggggaacgctactagcaggccatggtgcattcgaaggcggtgcttcaggtgtcaccaggtcaagtgatggtgatggagaaggtgaag |
33452161 |
T |
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| Q |
109 |
gtactggagaccaaccatcttgttttggctgcacagttatgaaaagcttttgtccattttcgcagtgatcggtaacacttgaaatgtaccatcttctccc |
208 |
Q |
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| T |
33452162 |
gtactggagaccaaccatcttgttttggctgcacagttatgaaaagcttttgtccattttcgcagtgatcggtaacacttgaaatgtaccatcttctccc |
33452261 |
T |
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| Q |
209 |
ataggttgtaattataattttatcttgtccactagttaacacaggtgctgtcgaaggaactgagc |
273 |
Q |
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| T |
33452262 |
ataggttgtaattataattttgtcttgcccactggttaacacaggtgctgtcaaaggaactgagc |
33452326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 112 - 273
Target Start/End: Original strand, 33399629 - 33399790
Alignment:
| Q |
112 |
ctggagaccaaccatcttgttttggctgcacagttatgaaaagcttttgtccattttcgcagtgatcggtaacacttgaaatgtaccatcttctcccata |
211 |
Q |
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| T |
33399629 |
ctggataccaaccatcttgttttggtaaaacatttatgaaaagcttttgtccattttcgcagtgattggcaacacctgaaatgtaccatcttctcccata |
33399728 |
T |
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| Q |
212 |
ggttgtaattataattttatcttgtccactagttaacacaggtgctgtcgaaggaactgagc |
273 |
Q |
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| T |
33399729 |
ggttgtcaatgcaattttatcatgtccacttgttaacactggtgctgcccaaggaactgagc |
33399790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 99 - 273
Target Start/End: Original strand, 33395729 - 33395903
Alignment:
| Q |
99 |
gaaggtgaaggtactggagaccaaccatcttgttttggctgcacagttatgaaaagcttttgtccattttcgcagtgatcggtaacacttgaaatgtacc |
198 |
Q |
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| T |
33395729 |
gaaggtgagggtactggagaccaaccaaactgtggtggctgcacgtttatgaaaagcttttggccaagattgcagtgatgagcagcacctgaaatgtacc |
33395828 |
T |
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| Q |
199 |
atcttctcccataggttgtaattataattttatcttgtccactagttaacacaggtgctgtcgaaggaactgagc |
273 |
Q |
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| T |
33395829 |
atcttcttccataggttgtcaataaaattgtatcatgtccactagttaacactggtgctctccaaggaattgagc |
33395903 |
T |
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