View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10373_low_17 (Length: 240)
Name: NF10373_low_17
Description: NF10373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10373_low_17 |
 | |
|
| [»] chr7 (10 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 39621132 - 39620910
Alignment:
| Q |
18 |
gatgtgaaatgacacctgtggtgtttgttttaggagaaacaaagctcttattgtagaattgagcattccagctcctgattctgtgaatcttcgttttcct |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39621132 |
gatgtgaaatgacacctgtggtgtttgttttaggagaaacaaagctcttattgtagaattgagcattccagctcctgattctgtgaatcttcgttttcct |
39621033 |
T |
|
| Q |
118 |
tcaaaatactcaagaccccttttcgctcaattcaaggcttgcttatggaaacaacattggtcttactggcggaatccgcgatacaatgcattaagatttc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39621032 |
tcaaaatactcaagaccccttttcgctcaattcaaggcttgcttatggaaacaacattggtcttactggcggaatccgcgatacaatgcattaagatttc |
39620933 |
T |
|
| Q |
218 |
tcttcacagccgttgcctctatc |
240 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
39620932 |
tcttcacagccgttgcctctatc |
39620910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 45 - 225
Target Start/End: Complemental strand, 39588278 - 39588098
Alignment:
| Q |
45 |
ttttaggagaaacaaagctcttattgtagaattgagcattccagctcctgattc-tgtgaatcttcgttttccttcaaaatactcaagaccccttttcgc |
143 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||||||||| ||| |||| ||| ||||||||||||| ||||| || || ||||| |
|
|
| T |
39588278 |
ttttaggagaaacaaagctcttattcaagaattgagcactccagctcctttttcaaatgaa-ctttgttttccttcaaagtactctaggtcc---ttcgc |
39588183 |
T |
|
| Q |
144 |
t---caattcaaggcttgcttatggaaacaacattggtcttactggcggaatccgcgatacaatgcattaagatttctcttcaca |
225 |
Q |
| |
|
| ||||| | | |||| ||||||||||||||||||||||||||||| || || | |||||||| |||| |||||||||||| |
|
|
| T |
39588182 |
tgtccaatttatgacttgtttatggaaacaacattggtcttactggcgcaaccctctgtacaatgccataaggtttctcttcaca |
39588098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 225
Target Start/End: Complemental strand, 39573663 - 39573591
Alignment:
| Q |
153 |
ggcttgcttatggaaacaacattggtcttactggcggaatccgcgatacaatgcattaagatttctcttcaca |
225 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |||||| |||||| || |||| ||| |||||||| |
|
|
| T |
39573663 |
ggcttgtttatggaaacaacattggtcttactggcgcaatccgttgtacaattcaataaggtttatcttcaca |
39573591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 194
Target Start/End: Complemental strand, 1083638 - 1083597
Alignment:
| Q |
153 |
ggcttgcttatggaaacaacattggtcttactggcggaatcc |
194 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1083638 |
ggcttgtttatggaaacaacattggtcttactggcgcaatcc |
1083597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 194
Target Start/End: Original strand, 39339875 - 39339916
Alignment:
| Q |
153 |
ggcttgcttatggaaacaacattggtcttactggcggaatcc |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
39339875 |
ggcttgcttatggaaacaacattggtcttattggcgcaatcc |
39339916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 194
Target Start/End: Original strand, 39354696 - 39354737
Alignment:
| Q |
153 |
ggcttgcttatggaaacaacattggtcttactggcggaatcc |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
39354696 |
ggcttgcttatggaaacaacattggtcttattggcgcaatcc |
39354737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 194
Target Start/End: Complemental strand, 39546331 - 39546290
Alignment:
| Q |
153 |
ggcttgcttatggaaacaacattggtcttactggcggaatcc |
194 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
39546331 |
ggcttgtttatggaaacaacattggtcttactggcgcaatcc |
39546290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 194
Target Start/End: Complemental strand, 39563124 - 39563083
Alignment:
| Q |
153 |
ggcttgcttatggaaacaacattggtcttactggcggaatcc |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
39563124 |
ggcttgcttatggaaacaacattggtcttattggcgcaatcc |
39563083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 194
Target Start/End: Original strand, 39367301 - 39367338
Alignment:
| Q |
157 |
tgcttatggaaacaacattggtcttactggcggaatcc |
194 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
39367301 |
tgcttatggaaacaacattggtcttattggcgcaatcc |
39367338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 82
Target Start/End: Complemental strand, 39573775 - 39573734
Alignment:
| Q |
41 |
tttgttttaggagaaacaaagctcttattgtagaattgagca |
82 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
39573775 |
tttgttataggagaaacaaagctcttattgaagatttgagca |
39573734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 2896179 - 2896130
Alignment:
| Q |
153 |
ggcttgcttatggaaacaacattggtcttactggcggaatccgcgataca |
202 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||| ||||||| ||||| |
|
|
| T |
2896179 |
ggcttgcctatggaaacaacattggtcatactggcgcaatccgccataca |
2896130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 2888188 - 2888237
Alignment:
| Q |
153 |
ggcttgcttatggaaacaacattggtcttactggcggaatccgcgataca |
202 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||| || |||| ||||| |
|
|
| T |
2888188 |
ggcttgcttatggaaacaacattggtcatattggcgcaacccgccataca |
2888237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University