View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10373_low_3 (Length: 496)
Name: NF10373_low_3
Description: NF10373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10373_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 20 - 478
Target Start/End: Complemental strand, 34097561 - 34097107
Alignment:
| Q |
20 |
atcaaggaggatgggatgatgacaatatgcaggagcaacttagcattggaaaaaatttgaaaccacatttcactagtaagagcatagtctctaatctctt |
119 |
Q |
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| T |
34097561 |
atcaaggaggatgggatgatgacaatatgcaggagcaacttagcattgggaaaaatttgaaaccacatttcactactaagagcatagtct--aatctctt |
34097464 |
T |
|
| Q |
120 |
ctaaaaaacacaaggagtg-gttgcctggactttgaaaccaggtaaaatggtagccttccttccatttggacatataactacaacccataatctaatacc |
218 |
Q |
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| T |
34097463 |
ctaaaaaacacaaggagaatgttgcctggactttgaaaccaggtaaaatggtagccttccttccatttggacatataac---aacccataatctaatatc |
34097367 |
T |
|
| Q |
219 |
gcctgtcttaattcgttaataaaccaattaggcctcttaattcttccttttttcctcatgagcatccaatatatcattaaaatccctaatgatgcaccac |
318 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34097366 |
gcatgtcttaattcgttaataaaccaattaggcctcttaattcttccttttttcctcatgagcatccaatatatcattaaaatccctaatgatgcaccac |
34097267 |
T |
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| Q |
319 |
gaaatagaaatattttgcgaaaaatcacaaataaagttccatgaatcccgctttcaactttcactaggataaccgtagtaccctatgaaatgataaatac |
418 |
Q |
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|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |
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| T |
34097266 |
gaaatataaatattttgcgagaaatcacaaataaagttccatgaatcccgctttcaactttcactaggataaccgtagtaccctatgaaacgataaacac |
34097167 |
T |
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| Q |
419 |
ctctacgagcatcaccaacatcagtatttgatgtgattagaagaataatctacaacattg |
478 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34097166 |
ctctacgagcatcaccaacatcagtatttgatgtgattagaagaataatctacaacattg |
34097107 |
T |
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