View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10373_low_5 (Length: 466)
Name: NF10373_low_5
Description: NF10373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10373_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 127; Significance: 2e-65; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 105 - 306
Target Start/End: Original strand, 36346002 - 36346206
Alignment:
| Q |
105 |
cagtattaattcttgtggcctatatggaaggca---gtctaattctatgtgtaaaaaattggatatcctccattgactagagaattaaaataatatcaaa |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
36346002 |
cagtattaattcttgtggcctatatggaaggcgcgggtctaattctatgtgtaaaaaattggatatcctccgttgactagaggattaaaataatatcaaa |
36346101 |
T |
|
| Q |
202 |
ttcaaaagactttgtatggaatatttgatgtcgatatcctgcgttgactaaaggattaaaataatatcaaatttaaaaaactttgtttgagatatttgat |
301 |
Q |
| |
|
|| |||| | |||||||| |||||||||||||||||| |||||||| || |||||||||||||||||||||| |||| ||||| | || |||||||||| |
|
|
| T |
36346102 |
tttaaaaaattttgtatgagatatttgatgtcgatatcttgcgttgattagaggattaaaataatatcaaattcaaaagactttatatgggatatttgat |
36346201 |
T |
|
| Q |
302 |
gtcga |
306 |
Q |
| |
|
||||| |
|
|
| T |
36346202 |
gtcga |
36346206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 174 - 330
Target Start/End: Original strand, 36346145 - 36346301
Alignment:
| Q |
174 |
ttgactagagaattaaaataatatcaaattcaaaagactttgtatggaatatttgatgtcgatatcctgcgttgactaaaggattaaaataatatcaaat |
273 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
36346145 |
ttgattagaggattaaaataatatcaaattcaaaagactttatatgggatatttgatgtcgatatcttgcgttgactagaggattaaaataatatcaaat |
36346244 |
T |
|
| Q |
274 |
ttaaaaaactttgtttgagatatttgatgtcgaagactctaattattatggtgagtt |
330 |
Q |
| |
|
||||| ||||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36346245 |
ctaaaagactttgtatgggatatttgatgtcgaagactctaattattatggtgagtt |
36346301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 366 - 433
Target Start/End: Original strand, 36346337 - 36346403
Alignment:
| Q |
366 |
tataattaaacttaataatttatcatgtgatcataataatctccatttattcgatatatttttctata |
433 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36346337 |
tataattaaattta-taatttatcatgtgatcataataatctccatttattcgatatatttttctata |
36346403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 36345906 - 36345964
Alignment:
| Q |
14 |
cagagacgtagttacatgattgtttacttttgaaatgggattgttctaattctcttccg |
72 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
36345906 |
cagagacgtagttacatgattgtttacttttgaaatgggattgttctaattcttttccg |
36345964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University