View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10373_low_6 (Length: 449)
Name: NF10373_low_6
Description: NF10373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10373_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 18 - 432
Target Start/End: Complemental strand, 42725973 - 42725559
Alignment:
| Q |
18 |
atcaatgtattatgtatattttatgctgtaaggagcacctatgttcataagggcattactaacaggctcttctaattttatgcagcgggttccatcaatg |
117 |
Q |
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| T |
42725973 |
atcaatttattatgtatattttatgctgtaaggagcacctatgttcataagggcattactaacaggctcttctaattttttgcagcgggttccatcaatg |
42725874 |
T |
|
| Q |
118 |
tcagcaacattttatctggcaagtgtcttgccaaaataagagcaagtaatagttctccaatggacgacaagtgtagttgctgtgacagttcttcaggtgg |
217 |
Q |
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| T |
42725873 |
tcagcaacattttatctggcaagtgtcttgccaaaataagagcaagtaatagttctccaatggacgacaagtgtagttgctgtgacagttcttcaggtgg |
42725774 |
T |
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| Q |
218 |
aagttgtaattcaagaaagcgaaagcatgtctccaaaatgaggagcacagttgctgaagccttggaagatattactgctctcttctatgacgaagatcgc |
317 |
Q |
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| T |
42725773 |
aagttgtaattcaagaaagcgaaagcatgtctccaaaatgaggagcacagttgctgaagccttggaagatattactgctctcttctatgacgaagatcgc |
42725674 |
T |
|
| Q |
318 |
aatgaaatctatacgggaaataggcacggtctagttcatgtctggtctaactgatataccatgttaacttcactgttgccttgtgttttcttattggctt |
417 |
Q |
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| T |
42725673 |
aatgaaatctatacgggaaataggcacggtctagttcatgtctggtctaactgatataccatgttaacttcactgttgccttgtgttttcttattggctt |
42725574 |
T |
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| Q |
418 |
ttcttcatgggtaag |
432 |
Q |
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| T |
42725573 |
ttcttcatgggtaag |
42725559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 220 - 372
Target Start/End: Original strand, 29034708 - 29034863
Alignment:
| Q |
220 |
gttgtaattcaagaaagcgaaagcatg---tctccaaaatgaggagcacagttgctgaagccttggaagatattactgctctcttctatgacgaagatcg |
316 |
Q |
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||||||||||||| ||| ||||||| | ||||| ||| |||| ||||||| |||||||||||||| ||||||||||| |||||||| |||||||| |
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| T |
29034708 |
gttgtaattcaaggaagagaaagcaggcctcctccagaataaggaacacagttagagaagccttggaagacattactgctcttttctatgatgaagatcg |
29034807 |
T |
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| Q |
317 |
caatgaaatctatacgggaaataggcacggtctagttcatgtctggtctaactgat |
372 |
Q |
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| T |
29034808 |
caatgagatctatacaggcaacaggcatggtctggttcatgtgtggtctaactgat |
29034863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 100 - 169
Target Start/End: Original strand, 29034588 - 29034657
Alignment:
| Q |
100 |
cagcgggttccatcaatgtcagcaacattttatctggcaagtgtcttgccaaaataagagcaagtaatag |
169 |
Q |
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| T |
29034588 |
cagcgggatccatcaatatcagcaacattttaaccggtaagtgtcttgcgaagataagggcaagtaatag |
29034657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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