View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10373_low_7 (Length: 419)
Name: NF10373_low_7
Description: NF10373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10373_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 54218280 - 54218678
Alignment:
| Q |
1 |
tgaagttatctaagagaatcttggggccaaaccaagatacatgatgcaagaaggggcgttatacatgtaaaaccattgatgattcaattttgattaaagg |
100 |
Q |
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| T |
54218280 |
tgaagttatctaagagaatcttggggccaaaccaagatacatgatgcgagaaggggcgttatacatgtaaaaccattgatgattcaattttgattaaagg |
54218379 |
T |
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| Q |
101 |
actttcattcctctacaaatggaatcaagcagaatgtgcaaaccatctttaataacattagttggttgcttggtaatgaagatacgatcaagtttttgat |
200 |
Q |
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| T |
54218380 |
actttcattcctctacaaatggaatcaagcagaatgtgcaaaccatctttaataacattagttggttgcttggtaatgaagatacgatcaagtttttgat |
54218479 |
T |
|
| Q |
201 |
ctgcgttccttacaataacttgacattcctcgtaggacaactagctacatatatattcctttgttttagcctttagtaggaggaagggagatcttttgaa |
300 |
Q |
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| T |
54218480 |
ctgtgttccttacaataacttgacattcttcgtaggacaactagctacatatatat-------ttttagcctttagtaggaggaagggagatcttttgaa |
54218572 |
T |
|
| Q |
301 |
agacatgttatagaaatatctttgtcaatcttcgttgccgtcaaggtgcaag---aaccattcttaacatataaatggtttcatttccagcaacaattga |
397 |
Q |
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| T |
54218573 |
agacatgttatagaaatatctttgtcaatcttcgttgccgtcaaggtgcaagaacaaccattcttaacatataaatagtttcatttccagcaacaattga |
54218672 |
T |
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