View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10373_low_8 (Length: 393)
Name: NF10373_low_8
Description: NF10373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10373_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 18 - 359
Target Start/End: Complemental strand, 37489354 - 37489013
Alignment:
| Q |
18 |
atttttcaggaggaggagaaactgcagctatcagatatgactggacttgatataaagcagataaataattggttcatcaatcagaggaaaagacactgga |
117 |
Q |
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| T |
37489354 |
atttttcaggaggaggagaaactgcagctatcagatatgactggacttgatataaagcagataaataattggttcatcaatcagaggaaaagacactgga |
37489255 |
T |
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| Q |
118 |
aaccatctgaagatatgagattttccattatggagggtgtaagtagcaccggcatagcaggacctctgtaagttaattctgcaggtggagtcgaatcgtc |
217 |
Q |
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| T |
37489254 |
aaccatctgaagatatgagattttccattatggagggtgtaagtagcaccggcatagcaggacctctgtaagttaattctgcaggtggagtagaatcgtc |
37489155 |
T |
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| Q |
218 |
gagtcttgttttaatctccgaaagaagtttacccttttgcttgaattaatgtgatggaaatgatattagctaggcttcggccatctcaaaagtccaatcc |
317 |
Q |
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| T |
37489154 |
gagtcttgttttaatctccgaaagaagtttacccttttgcttgaattaatgtgatggaaatgatattagctaggcttcggccatctcaaaagtccaatca |
37489055 |
T |
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| Q |
318 |
agaacattacgcctatgttaatttttcgaaccggcacctatg |
359 |
Q |
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| T |
37489054 |
agaacattacgcctatgttaattttctgaaccggcacctatg |
37489013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 130
Target Start/End: Original strand, 4661626 - 4661684
Alignment:
| Q |
72 |
aagcagataaataattggttcatcaatcagaggaaaagacactggaaaccatctgaaga |
130 |
Q |
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| T |
4661626 |
aagcaaataaataactggttcataaatcaaaggaagaggcactggaaaccatcagaaga |
4661684 |
T |
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