View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10373_low_9 (Length: 307)
Name: NF10373_low_9
Description: NF10373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10373_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 19 - 294
Target Start/End: Original strand, 32376924 - 32377199
Alignment:
| Q |
19 |
aatacaaatatccaaaagggagccatacaaaacagcataaatgtagctatatgaacatacatgttcccaaaaccaagtctctccatgttccatccaaaca |
118 |
Q |
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| T |
32376924 |
aatacaaatatccaaaagggagccatacaaaacagcataaatgtagctatatgaacatacatgttcccaaatccaagtctctccatgttccatccaaacg |
32377023 |
T |
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| Q |
119 |
cacaaaaagggcagaaaagtgagagatatgataatgatagatcattccaaatgtcaagtattcctccactccatttcggtctattttctataattcctcc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32377024 |
cacaaaaagggcagaaaagtgagagatatgataatgatagatcattccaaatgtcaagtattcctccactccatttcggtctattttctataattcctcc |
32377123 |
T |
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| Q |
219 |
ttgttgatctttagatacaaatgcgtattttttctcaaagggtttgtctctaacttgaacctgtgattcttcatct |
294 |
Q |
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| T |
32377124 |
ttgttgatctttagatacaaatgcgtattttttctcgaagggtttgtctctaacttgaacctgtgattcttcatct |
32377199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 19 - 294
Target Start/End: Original strand, 32365239 - 32365514
Alignment:
| Q |
19 |
aatacaaatatccaaaagggagccatacaaaacagcataaatgtagctatatgaacatacatgttcccaaaaccaagtctctccatgttccatccaaaca |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
32365239 |
aatacaaatatccaaaagggagccatacaaaacagcataaatgtagctatatgaacatacatgttcccaaatccaagtctctccatgttccatccaaacg |
32365338 |
T |
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| Q |
119 |
cacaaaaagggcagaaaagtgagagatatgataatgatagatcattccaaatgtcaagtattcctccactccatttcggtctattttctataattcctcc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32365339 |
cacaaaaagggcagaaaagtgagagatatgataatgatagatcattccaaatgtcaagtattcctccactccatttcggtctattttctataatacctcc |
32365438 |
T |
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| Q |
219 |
ttgttgatctttagatacaaatgcgtattttttctcaaagggtttgtctctaacttgaacctgtgattcttcatct |
294 |
Q |
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| T |
32365439 |
ttgttgatctttagatgcaaatgcatattttttctcgaatggtttctctctaacttgaacctgtgattcttcatct |
32365514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 28 - 206
Target Start/End: Original strand, 36121866 - 36122044
Alignment:
| Q |
28 |
atccaaaagggagccatacaaaacagcataaatgtagctatatgaacatacatgttcccaaaaccaagtctctccatgttccatccaaacacacaaaaag |
127 |
Q |
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||||||||||| |||||||| || |||||||| || || || |||||||||||||| ||||| |||||||||||||| ||||| ||||| ||||||||| |
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| T |
36121866 |
atccaaaagggggccatacagaaaagcataaaagtggcaatgtgaacatacatgtttccaaagccaagtctctccatattccaaccaaatgcacaaaaag |
36121965 |
T |
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| Q |
128 |
ggcagaaaagtgagagatatgataatgatagatcattccaaatgtcaagtattcctccactccatttcggtctattttc |
206 |
Q |
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||||||||||| | ||||| | || | ||| | |||||||||||||||||| |||||||| || ||||||||||| |
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| T |
36121966 |
tacagaaaagtgataaatatgcttgagagatatcgtcccaaatgtcaagtattccaccactccactttggtctattttc |
36122044 |
T |
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