View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10374_high_1 (Length: 500)
Name: NF10374_high_1
Description: NF10374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10374_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 346; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 51 - 444
Target Start/End: Original strand, 39661593 - 39661986
Alignment:
| Q |
51 |
aggggtgttagcaaatgcagagccattattttgcatggcaaacgcaggggcgttagcaaatgcagaggcattgtttttcatggcaaatgcaggggcatta |
150 |
Q |
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| T |
39661593 |
aggggcgttagcaaatgcagaggcattgtttttcatggcaaatgcaggggcgttcgcaaatgcagaggtattatttttcatggcaaatgcaggggcatta |
39661692 |
T |
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| Q |
151 |
ttttgtgtggcaaatgcagtagctaaattcttcattaaggtctgattttgatgtgtgagagtttttgaaagcaggcgcgacacatctgaccttaatgtct |
250 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39661693 |
ttttgtgtggcaaatgcagtggctaaattcttcattaaggtctgattttgatgtgcgagagtttttgaaagcaggcgcgacacatctgaccttaatgtct |
39661792 |
T |
|
| Q |
251 |
ttgctgagatgggacgtgatacagcttttcttgaactccgattcattagcacggaaagtgaagacaactgtttggcatcaagaggcaaatatatggtcat |
350 |
Q |
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| T |
39661793 |
ttgctgagaggggacgtgatacagcttttcttgaactccgattcattagcacggaaagtgaagacaactgtttggcatcaagaggcaaatatatggtcat |
39661892 |
T |
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| Q |
351 |
gttcacaatcatcaaaaatctaaatgcatataatatactcaggcatcctacatgagaacagcagttagaggccacagaagataacaaaacacat |
444 |
Q |
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| T |
39661893 |
gttcacaatcatcaaaaatctaaatgcatataatatactcaggcatcctacatgagaacagcagttagaggccacagaagaaaacaaaacacat |
39661986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 133 - 353
Target Start/End: Original strand, 39657090 - 39657309
Alignment:
| Q |
133 |
gcaaatgcaggggcattattttgtgtggcaaatgcagtagctaaattcttcattaaggtctgattttgatgtgtgagagtttttgaaagcaggcgcgaca |
232 |
Q |
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| T |
39657090 |
gcaaatccagaggcattattttgtttggcaaatgcagtggctaaattcttcataaaggcctgattttgatatgtgccagtttttgaaagcaggcccgaca |
39657189 |
T |
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| Q |
233 |
catctgaccttaatgtctttgctgagatgggacgtgatacagcttttcttgaactccgattcattagcacggaaagtgaagacaactgtttggcatcaag |
332 |
Q |
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| T |
39657190 |
cagctgtccttgatctccttgctgagaggggacgtggtgcagattttcttgatctccgattcattagcacagaaagtgaagacaactgtttggcatcaag |
39657289 |
T |
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| Q |
333 |
aggcaaatatatggtcatgtt |
353 |
Q |
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| T |
39657290 |
aggcaaa-atatggttatgtt |
39657309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 17 - 146
Target Start/End: Original strand, 39661514 - 39661643
Alignment:
| Q |
17 |
aaaatgcaggggaataattttgcatagttaatggaggggtgttagcaaatgcagagccattattttgcatggcaaacgcaggggcgttagcaaatgcaga |
116 |
Q |
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| T |
39661514 |
aaaatgcaggggaataattttgcatagcgaatggaggggtgttagcaaatgcagagccattattttgcatggcaaacgcaggggcgttagcaaatgcaga |
39661613 |
T |
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| Q |
117 |
ggcattgtttttcatggcaaatgcaggggc |
146 |
Q |
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| T |
39661614 |
ggcattgtttttcatggcaaatgcaggggc |
39661643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 18 - 146
Target Start/End: Original strand, 39656951 - 39657079
Alignment:
| Q |
18 |
aaatgcaggggaataattttgcatagttaatggaggggtgttagcaaatgcagagccattattttgcatggcaaacgcaggggcgttagcaaatgcagag |
117 |
Q |
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||||||||||| || ||||| ||| | |||| ||||| | ||||||| |||||| ||||||| | ||||| ||| | |||||| |||||||||| |||| |
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| T |
39656951 |
aaatgcaggggcattatttttcatggcaaatgcaggggcgctagcaaacgcagaggcattattattcatggaaaatgaaggggctttagcaaatgtagag |
39657050 |
T |
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| Q |
118 |
gcattgtttttcatggcaaatgcaggggc |
146 |
Q |
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| T |
39657051 |
gcattatttttcatggcagatgcaggggc |
39657079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 279 - 319
Target Start/End: Original strand, 39652319 - 39652359
Alignment:
| Q |
279 |
tcttgaactccgattcattagcacggaaagtgaagacaact |
319 |
Q |
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| T |
39652319 |
tcttgatctccgattcattagcacggaaagtgaagacaact |
39652359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 452 - 492
Target Start/End: Original strand, 39662201 - 39662241
Alignment:
| Q |
452 |
cttctacaatgacaaaactgaccatttcaacccttcttctc |
492 |
Q |
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| T |
39662201 |
cttctacaatgacaaaattgaccatttcaacccttcttctc |
39662241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 439
Target Start/End: Original strand, 39657421 - 39657471
Alignment:
| Q |
389 |
tcaggcatcctacatgagaacagcagttagaggccacagaagataacaaaa |
439 |
Q |
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||||||||||| ||||||||||||||||||||| || ||| || ||||||| |
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| T |
39657421 |
tcaggcatcctgcatgagaacagcagttagagggcagagaggaaaacaaaa |
39657471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 169
Target Start/End: Original strand, 39661461 - 39661522
Alignment:
| Q |
108 |
aaatgcagaggcattgtttttcatggcaaatgcaggggcattattttgtgtggcaaatgcag |
169 |
Q |
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|||||||| |||||| | || ||||||||||||||||||||||| ||| ||| |||||||| |
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| T |
39661461 |
aaatgcaggggcattatattgcatggcaaatgcaggggcattatattgcatggaaaatgcag |
39661522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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