View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10374_low_1 (Length: 599)

Name: NF10374_low_1
Description: NF10374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10374_low_1
NF10374_low_1
[»] chr4 (28 HSPs)
chr4 (17-592)||(5572650-5573225)
chr4 (17-592)||(5584857-5585432)
chr4 (181-437)||(5611885-5612141)
chr4 (190-470)||(3747275-3747555)
chr4 (202-488)||(5563090-5563376)
chr4 (185-470)||(5557288-5557573)
chr4 (181-470)||(5551519-5551808)
chr4 (181-470)||(5854590-5854879)
chr4 (219-490)||(5856458-5856729)
chr4 (202-413)||(5887894-5888105)
chr4 (224-417)||(5849668-5849860)
chr4 (218-413)||(5896745-5896940)
chr4 (502-592)||(5540787-5540877)
chr4 (239-488)||(253340-253590)
chr4 (23-173)||(5557105-5557255)
chr4 (190-488)||(5603776-5604074)
chr4 (23-178)||(5603588-5603743)
chr4 (44-173)||(5562911-5563040)
chr4 (320-402)||(5890965-5891047)
chr4 (35-176)||(5856247-5856388)
chr4 (44-162)||(5611727-5611845)
chr4 (32-162)||(5849946-5850076)
chr4 (44-173)||(5888146-5888275)
chr4 (59-173)||(5551373-5551487)
chr4 (44-158)||(5897024-5897138)
chr4 (59-172)||(5891158-5891270)
chr4 (60-173)||(5854911-5855024)
chr4 (77-176)||(253677-253776)
[»] chr8 (2 HSPs)
chr8 (194-470)||(1481522-1481798)
chr8 (23-162)||(1481330-1481469)


Alignment Details
Target: chr4 (Bit Score: 476; Significance: 0; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 17 - 592
Target Start/End: Complemental strand, 5573225 - 5572650
Alignment:
Q  17 agatgaatccttgaaaagatccagcaaagaattttatccactagtttccaatatcttatcctccattgcttccaaaacatgagaggaccaatgacaattc 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  5573225 agatgaatccttgaaaagatccagcaaagaattttatccactagtttccaatatcttatcctccattgcttccaaaacattagaggaccaatgacaattc 5573126  T
Q  117 cgagaccaaaaacaaaccccaattctacacttaaaaaattccagtctgttgaacaagatagcaactcatcattccttttaccatctggtttttcagtcaa 216  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5573125 cgagaccaaaaacaaaccccaattctacacttaaaaatttccagtctgttgaacaagatagcaactcatcattccttttaccatctggtttttcagtcaa 5573026  T
Q  217 tggaggtccatatagcccatcatttccttcaaaagaagaagactgaaacgactgaagttgagtacctgttgggatcttccccatcaaatgattgaaggaa 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5573025 tggaggtccatatagcccatcatttccttcaaaagaagaagactgaaatgactgaagttgagtacctgttgggatcttccccaccaaatgattgaaggaa 5572926  T
Q  317 agattcaaatatgaaaggaaggacaagcttgcaagctgcacaggaatttcaccagccaaagtgttatttgagaggtctaaggactccaattgtttcaagt 416  Q
    || ||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5572925 aggttcaaatatgaaaggaaggacaagctttctagctgcacaggaatttcaccagtcaaagtgttatttgagaggtctaaggactccaattgtttcaagt 5572826  T
Q  417 tccctatggaagatgggatttttcctgagagacggttgtttgaaatgttgagaatgtaaagtgctttgaagttccctattgaatatggtatttcgccttc 516  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||    
T  5572825 tccctatggaagatgggattttacctgagagacggttgtttgaaatgttgagaatgtaaagtgctttgaagttccctattgaatatggtataggtccttc 5572726  T
Q  517 aaaatggttggacgagaggtcgacggctgtgaagaccgttaaaattttaacgtactccatctgttgacctttgctt 592  Q
    |||||| || || |||| ||||| ||  |||||||| |||| |||||||||  | |||||||||||||||||||||    
T  5572725 aaaatgattcgatgagaagtcgatggaagtgaagactgttagaattttaactaaatccatctgttgacctttgctt 5572650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 17 - 592
Target Start/End: Complemental strand, 5585432 - 5584857
Alignment:
Q  17 agatgaatccttgaaaagatccagcaaagaattttatccactagtttccaatatcttatcctccattgcttccaaaacatgagaggaccaatgacaattc 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  5585432 agatgaatccttgaaaagatccagcaaagaattttatccactagtttccaatatcttatcctccattgcttccaaaacattagaggaccaatgacaattc 5585333  T
Q  117 cgagaccaaaaacaaaccccaattctacacttaaaaaattccagtctgttgaacaagatagcaactcatcattccttttaccatctggtttttcagtcaa 216  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5585332 cgagaccaaaaacaaaccccaattctacacttaaaaatttccagtctgttgaacaagatagcaactcatcattccttttaccatctggtttttcagtcaa 5585233  T
Q  217 tggaggtccatatagcccatcatttccttcaaaagaagaagactgaaacgactgaagttgagtacctgttgggatcttccccatcaaatgattgaaggaa 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5585232 tggaggtccatatagcccatcatttccttcaaaagaagaagactgaaatgactgaagttgagtacctgttgggatcttccccaccaaatgattgaaggaa 5585133  T
Q  317 agattcaaatatgaaaggaaggacaagcttgcaagctgcacaggaatttcaccagccaaagtgttatttgagaggtctaaggactccaattgtttcaagt 416  Q
    || ||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5585132 aggttcaaatatgaaaggaaggacaagctttctagctgcacaggaatttcaccagtcaaagtgttatttgagaggtctaaggactccaattgtttcaagt 5585033  T
Q  417 tccctatggaagatgggatttttcctgagagacggttgtttgaaatgttgagaatgtaaagtgctttgaagttccctattgaatatggtatttcgccttc 516  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||    
T  5585032 tccctatggaagatgggattttacctgagagacggttgtttgaaatgttgagaatgtaaagtgctttgaagttccctattgaatatggtataggtccttc 5584933  T
Q  517 aaaatggttggacgagaggtcgacggctgtgaagaccgttaaaattttaacgtactccatctgttgacctttgctt 592  Q
    |||||| || || |||| ||||| ||  |||||||| |||| |||||||||  | |||||||||||||||||||||    
T  5584932 aaaatgattcgatgagaagtcgatggaagtgaagactgttagaattttaactaaatccatctgttgacctttgctt 5584857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 181 - 437
Target Start/End: Original strand, 5611885 - 5612141
Alignment:
Q  181 ctcatcattccttttaccatctggtttttcagtcaatggaggtccatatagcccatcatttccttcaaaagaagaagactgaaacgactgaagttgagta 280  Q
    |||||| | ||||||||||| |||| |||||||||| ||||||||||||||||||| ||| |||||||| ||||||| |||||| |||||||||||||||    
T  5611885 ctcatcctgccttttaccatttggtgtttcagtcaacggaggtccatatagcccattattcccttcaaatgaagaagcctgaaatgactgaagttgagta 5611984  T
Q  281 cctgttgggatcttccccatcaaatgattgaaggaaagattcaaatatgaaaggaaggacaagcttgcaagctgcacaggaatttcaccagccaaagtgt 380  Q
    ||||||||||||||||| | |||||||||||||||||| |||||||| |||||||| |||| ||||||||| |||| ||||||||||||| |||| | ||    
T  5611985 cctgttgggatcttcccaaccaaatgattgaaggaaagtttcaaataagaaaggaatgacatgcttgcaagttgcagaggaatttcaccaaccaaggagt 5612084  T
Q  381 tatttgagaggtctaaggactccaattgtttcaagttccctatggaagatgggattt 437  Q
    | ||||||| ||| |||||||| || ||||||| |||||| || |  ||||||||||    
T  5612085 tgtttgagaagtccaaggactctaactgtttcaggttcccaatagttgatgggattt 5612141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 190 - 470
Target Start/End: Original strand, 3747275 - 3747555
Alignment:
Q  190 ccttttaccatctggtttttcagtcaatggaggtccatatagcccatcatttccttcaaaagaagaagactgaaacgactgaagttgagtacctgttggg 289  Q
    |||| |||||||||||||||||||||| ||||| |||||||| |||| ||||||||| || ||||| |  | ||| ||||||||||| |||||||||||     
T  3747275 ccttataccatctggtttttcagtcaacggaggaccatatagaccataatttccttcgaacgaagatgcttcaaatgactgaagttgcgtacctgttgga 3747374  T
Q  290 atcttccccatcaaatgattgaaggaaagattcaaatatgaaaggaaggacaagcttgcaagctgcacaggaatttcaccagccaaagtgttatttgaga 389  Q
    |||||||| | ||||||||||||||| || |||||||||||||||||||||||||| ||||| ||||  |||||||||||| |||| | |||||||||||    
T  3747375 atcttcccaaccaaatgattgaaggagaggttcaaatatgaaaggaaggacaagctggcaagttgcatgggaatttcaccaaccaatgagttatttgaga 3747474  T
Q  390 ggtctaaggactccaattgtttcaagttccctatggaagatgggatttttcctgagagacggttgtttgaaatgttgagaa 470  Q
    |||| |||||||| || ||||||||||| ||||| |  ||||| ||||  || ||||||  ||||||||||| ||||||||    
T  3747475 ggtccaaggactctaactgtttcaagtttcctatagttgatggaatttcaccagagagattgttgtttgaaaagttgagaa 3747555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 202 - 488
Target Start/End: Original strand, 5563090 - 5563376
Alignment:
Q  202 tggtttttcagtcaatggaggtccatatagcccatcatttccttcaaaagaagaagactgaaacgactgaagttgagtacctgttgggatcttccccatc 301  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||| ||||| |  | ||| || |||||||| |||||||||||||||||||||| |    
T  5563090 tggtgtttcagttaatggaggtccatatagcccatcatttccttcaaaggaagatgcttcaaatgattgaagttgggtacctgttgggatcttccccacc 5563189  T
Q  302 aaatgattgaaggaaagattcaaatatgaaaggaaggacaagcttgcaagctgcacaggaatttcaccagccaaagtgttatttgagaggtctaaggact 401  Q
    |||||||||| |||||| |||||  | |||||||| |||| |||||||| |||||||||||| | |||| ||| || ||||||||||||||| |||||||    
T  5563190 aaatgattgatggaaaggttcaagaaagaaaggaatgacaggcttgcaatctgcacaggaatcttaccaaccagagagttatttgagaggtccaaggact 5563289  T
Q  402 ccaattgtttcaagttccctatggaagatgggatttttcctgagagacggttgtttgaaatgttgagaatgtaaagtgctttgaagt 488  Q
    |||| ||||||| |||||| || |  ||||| ||||  || ||||||   |||||||||| ||||||||  ||||||||||||||||    
T  5563290 ccaactgtttcaggttcccgatagttgatggaatttcaccagagagagcattgtttgaaaagttgagaacataaagtgctttgaagt 5563376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 185 - 470
Target Start/End: Original strand, 5557288 - 5557573
Alignment:
Q  185 tcattccttttaccatctggtttttcagtcaatggaggtccatatagcccatcatttccttcaaaagaagaagactgaaacgactgaagttgagtacctg 284  Q
    |||| ||||||||||||| || || | ||||||||||| |||||||| |||||||| |||||||| ||||| |  | ||| ||||||||||| |||||||    
T  5557288 tcatgccttttaccatctagtcttaccgtcaatggaggaccatatagtccatcattaccttcaaatgaagatgcttcaaatgactgaagttgggtacctg 5557387  T
Q  285 ttgggatcttccccatcaaatgattgaaggaaagattcaaatatgaaaggaaggacaagcttgcaagctgcacaggaatttcaccagccaaagtgttatt 384  Q
    |||||||| |||| |  |||||||||||||| || |||||||| |||||||| |||| ||||||||| ||||| |||||||||||| |||| | ||||||    
T  5557388 ttgggatcatcccaactaaatgattgaaggagaggttcaaataagaaaggaatgacatgcttgcaagttgcactggaatttcaccaaccaatgagttatt 5557487  T
Q  385 tgagaggtctaaggactccaattgtttcaagttccctatggaagatgggatttttcctgagagacggttgtttgaaatgttgagaa 470  Q
    ||||||||| ||||||||||| ||||||| |||||| || |  ||||||||||  || ||||||   |||||||||| ||||||||    
T  5557488 tgagaggtccaaggactccaactgtttcaggttcccaatagttgatgggatttcaccagagagagcattgtttgaaaagttgagaa 5557573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 181 - 470
Target Start/End: Original strand, 5551519 - 5551808
Alignment:
Q  181 ctcatcattccttttaccatctggtttttcagtcaatggaggtccatatagcccatcatttccttcaaaagaagaagactgaaacgactgaagttgagta 280  Q
    |||||| | ||| ||||||| | ||||||||| || | |||||||||||||||| |  ||||||||||| ||||| |  ||||| |||||||||||||||    
T  5551519 ctcatcctgcctgttaccatttagtttttcaggcagtagaggtccatatagccccttgtttccttcaaatgaagacgcttgaaatgactgaagttgagta 5551618  T
Q  281 cctgttgggatcttccccatcaaatgattgaaggaaagattcaaatatgaaaggaaggacaagcttgcaagctgcacaggaatttcaccagccaaagtgt 380  Q
    ||||| |||||||| || | |||||||||||||||||| |||||||| |||||||| || ||||||||||| |||||||| ||| ||||| |||| | ||    
T  5551619 cctgtagggatctttccaaccaaatgattgaaggaaaggttcaaataagaaaggaatgataagcttgcaagttgcacaggtattacaccaaccaaggagt 5551718  T
Q  381 tatttgagaggtctaaggactccaattgtttcaagttccctatggaagatgggatttttcctgagagacggttgtttgaaatgttgagaa 470  Q
    |||||||||||||||| ||||| || ||||||| |||||| || |  ||||||||||  || |||| ||  ||||| |||| ||||||||    
T  5551719 tatttgagaggtctaatgactctaactgtttcaggttcccaatagttgatgggatttcaccggagataccattgttcgaaaagttgagaa 5551808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 181 - 470
Target Start/End: Complemental strand, 5854879 - 5854590
Alignment:
Q  181 ctcatcattccttttaccatctggtttttcagtcaatggaggtccatatagcccatcatttccttcaaaagaagaagactgaaacgactgaagttgagta 280  Q
    |||||| | ||||||||||| ||||||||||| || ||||||||||||||||||||  ||||||||||| ||||  |  ||||| ||||||||||||||     
T  5854879 ctcatcctgccttttaccatttggtttttcaggcagtggaggtccatatagcccattgtttccttcaaacgaagtcgcttgaaatgactgaagttgagtt 5854780  T
Q  281 cctgttgggatcttccccatcaaatgattgaaggaaagattcaaatatgaaaggaaggacaagcttgcaagctgcacaggaatttcaccagccaaagtgt 380  Q
    ||||| |||||||| || | ||||| |||||||||||| |||||||| || |||||  |||||||||| || |||||||| ||| ||||| |||| | ||    
T  5854779 cctgtcgggatctttccaaccaaataattgaaggaaaggttcaaataagagaggaacaacaagcttgccagttgcacaggtattacaccaaccaaggagt 5854680  T
Q  381 tatttgagaggtctaaggactccaattgtttcaagttccctatggaagatgggatttttcctgagagacggttgtttgaaatgttgagaa 470  Q
    |||||||||||||||| ||||| || ||||||| |||||| || |  ||||||||||  || |||| |   |||||||||| ||||||||    
T  5854679 tatttgagaggtctaatgactctaactgtttcaggttcccgatagttgatgggatttcaccagagaaagcattgtttgaaaagttgagaa 5854590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 219 - 490
Target Start/End: Original strand, 5856458 - 5856729
Alignment:
Q  219 gaggtccatatagcccatcatttccttcaaaagaagaagactgaaacgactgaagttgagtacctgttgggatcttccccatcaaatgattgaaggaaag 318  Q
    ||||||||||||  || || ||||||| ||| ||||||   | ||| |||||||||||||| |||||||| |||||||||   ||||||||||| || ||    
T  5856458 gaggtccatataatccgtcgtttcctttaaaggaagaatcgtcaaatgactgaagttgagtgcctgttggaatcttccccgcgaaatgattgaatgagag 5856557  T
Q  319 attcaaatatgaaaggaaggacaagcttgcaagctgcacaggaatttcaccagccaaagtgttatttgagaggtctaaggactccaattgtttcaagttc 418  Q
     ||||| || |||||||| ||||  |||||||| ||||  ||||||||||||  ||||| |||||||||||||||||| |||||||| |||||||||||     
T  5856558 gttcaagtaagaaaggaatgacagacttgcaagttgcatgggaatttcaccaatcaaagagttatttgagaggtctaatgactccaactgtttcaagttt 5856657  T
Q  419 cctatggaagatgggatttttcctgagagacggttgtttgaaatgttgagaatgtaaagtgctttgaagttc 490  Q
    || || |||||||||||||  ||||||||||  |||||||||| ||||||||  | ||||||||||||||||    
T  5856658 ccaatagaagatgggatttcacctgagagacaattgtttgaaaagttgagaacatgaagtgctttgaagttc 5856729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 202 - 413
Target Start/End: Complemental strand, 5888105 - 5887894
Alignment:
Q  202 tggtttttcagtcaatggaggtccatatagcccatcatttccttcaaaagaagaagactgaaacgactgaagttgagtacctgttgggatcttccccatc 301  Q
    |||| ||||||| ||||||||||||||||| |||||||| |||||||| ||||| |  | ||| ||||||||||| |||||||||||||||||||| | |    
T  5888105 tggtgtttcagttaatggaggtccatataggccatcattaccttcaaacgaagatgcttcaaatgactgaagttgggtacctgttgggatcttcccaacc 5888006  T
Q  302 aaatgattgaaggaaagattcaaatatgaaaggaaggacaagcttgcaagctgcacaggaatttcaccagccaaagtgttatttgagaggtctaaggact 401  Q
    ||||||||||| ||||| ||||||||  ||||||| |||| ||||||||| |||| ||||||||||||| |||| | ||| ||||||||||| |||||||    
T  5888005 aaatgattgaacgaaaggttcaaataacaaaggaatgacatgcttgcaagttgcagaggaatttcaccaaccaaggagttgtttgagaggtccaaggact 5887906  T
Q  402 ccaattgtttca 413  Q
    | || |||||||    
T  5887905 ctaactgtttca 5887894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 224 - 417
Target Start/End: Complemental strand, 5849860 - 5849668
Alignment:
Q  224 ccatatagcccatcatttccttcaaaagaagaagactgaaacgactgaagttgagtacctgttgggatcttccccatcaaatgattgaaggaaagattca 323  Q
    |||||||| |||||||| |||||||| || || |  | ||| ||||||||||| |||||||||||||||||||||| ||||||||||||||| || ||||    
T  5849860 ccatatagtccatcattaccttcaaacgacgatgcttcaaatgactgaagttgggtacctgttgggatcttccccaccaaatgattgaaggataggttca 5849761  T
Q  324 aatatgaaaggaaggacaagcttgcaagctgcacaggaatttcaccagccaaagtgttatttgagaggtctaaggactccaattgtttcaagtt 417  Q
    |||| ||||||||| ||||| |||||| ||||||||||| ||||||| |||||| ||||||||||||||| |||||||| |  |||||||||||    
T  5849760 aataagaaaggaagaacaagtttgcaaactgcacaggaa-ttcaccaaccaaagagttatttgagaggtccaaggactctagctgtttcaagtt 5849668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 218 - 413
Target Start/End: Complemental strand, 5896940 - 5896745
Alignment:
Q  218 ggaggtccatatagcccatcatttccttcaaaagaagaagactgaaacgactgaagttgagtacctgttgggatcttccccatcaaatgattgaaggaaa 317  Q
    ||||| |||||||| |||||||| |||  ||| ||||| |  | ||| ||||||||||| ||||||||||| |||||||||| ||||||||||| ||| |    
T  5896940 ggaggaccatatagtccatcattacctctaaacgaagatgcttcaaatgactgaagttgggtacctgttggaatcttccccaccaaatgattgagggata 5896841  T
Q  318 gattcaaatatgaaaggaaggacaagcttgcaagctgcacaggaatttcaccagccaaagtgttatttgagaggtctaaggactccaattgtttca 413  Q
    | |||||||| |||||||| ||||| |||||||| ||||| |||||||||||| |||||| ||||||||||||||| |||||||| | ||||||||    
T  5896840 ggttcaaataagaaaggaatgacaaacttgcaagttgcaccggaatttcaccaaccaaagagttatttgagaggtccaaggactctagttgtttca 5896745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 502 - 592
Target Start/End: Complemental strand, 5540877 - 5540787
Alignment:
Q  502 tggtatttcgccttcaaaatggttggacgagaggtcgacggctgtgaagaccgttaaaattttaacgtactccatctgttgacctttgctt 592  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  5540877 tggtatttcgccttcaaaatggttggatgagaggtcgacggctgtgaagactgttaaaattttaacgtactccatctgttgacctttgctt 5540787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 239 - 488
Target Start/End: Complemental strand, 253590 - 253340
Alignment:
Q  239 tttccttcaaaagaagaagactgaaacgactgaagttgagtacctgttgggatcttccccatcaaatgattgaaggaaagattc----aaatatgaaagg 334  Q
    ||||||||||  |||||||  ||||| | |||||||||||||||||| || |||| ||||| ||||||||||||||| || |||    ||||| |||||     
T  253590 tttccttcaagggaagaagcttgaaatg-ctgaagttgagtacctgtgggaatctcccccaccaaatgattgaaggagaggttctaataaataagaaaga 253492  T
Q  335 aaggacaagcttgcaagctgcacaggaatttcaccagccaaagtgttatttgagaggtctaaggactccaattgtttcaagttccctatggaagatggga 434  Q
    | |||||||||| |||| | |||||||||||  | | | |||| |||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||    
T  253491 agggacaagcttccaagtttcacaggaattttgctaactaaagagttatttgagaggtctaaggactctaattgtttcaagttccctatagaagacggga 253392  T
Q  435 tttttcctgagagacggttgtttgaaatgttgagaatgtaaagtgctttgaagt 488  Q
    |||  |||  |||||  |||||||||| |||||||   |||||| |||||||||    
T  253391 tttcgcct--gagaccattgtttgaaaagttgagagcataaagttctttgaagt 253340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 23 - 173
Target Start/End: Original strand, 5557105 - 5557255
Alignment:
Q  23 atccttgaaaagatccagcaaagaattttatccactagtttccaatatcttatcctccattgcttccaaaacatgagaggaccaatgacaattccgagac 122  Q
    ||||||||||||||||||||||||||||| ||||| |||||| ||||  ||| ||||||||||||||||||||| |  |||| |||||| |||||||  |    
T  5557105 atccttgaaaagatccagcaaagaattttgtccacaagtttcaaataatttaccctccattgcttccaaaacattatgggacaaatgactattccgaatc 5557204  T
Q  123 caaaaacaaaccccaattctacacttaaaaaattccagtctgttgaacaag 173  Q
    |||| ||||| |||| ||||||||||| ||||||||||||  |||||||||    
T  5557205 caaacacaaatcccagttctacacttataaaattccagtcaattgaacaag 5557255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 190 - 488
Target Start/End: Original strand, 5603776 - 5604074
Alignment:
Q  190 ccttttaccatctggtttttcagtcaatggaggtccatatagcccatcatttccttcaaaagaagaagactgaaacgactgaagttgagtacctgttggg 289  Q
    ||||||| ||| |||||||| |||| | ||||| |||||||||||||| ||||||||||| || ||    |  || ||||||| ||| || ||||||| |    
T  5603776 ccttttatcatttggttttttagtccaaggaggaccatatagcccatcgtttccttcaaatgatgattcttcgaatgactgaatttgggtgcctgttgag 5603875  T
Q  290 atcttccccatcaaatgattgaaggaaagattcaaatatgaaaggaaggacaagcttgcaagctgcacaggaatttcaccagccaaagtgttatttgaga 389  Q
    |||||| ||  |||| ||||| |||| || |||||  | |||||||| |||| |||||||| ||||||||||||| ||||| ||| |  |||||||||||    
T  5603876 atcttcaccgccaaacgattggaggagaggttcaaggaagaaaggaatgacaggcttgcaatctgcacaggaattccaccaaccagaaagttatttgaga 5603975  T
Q  390 ggtctaaggactccaattgtttcaagttccctatggaagatgggatttttcctgagagacggttgtttgaaatgttgagaatgtaaagtgctttgaagt 488  Q
    |||| || |||||||| ||||||| |||||| |  |  ||||||||||  ||  ||||||  |||||||||| ||||||||  ||||||||||||||||    
T  5603976 ggtccaaagactccaactgtttcaggttcccaacagttgatgggatttcaccatagagaccattgtttgaaaagttgagaacataaagtgctttgaagt 5604074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 23 - 178
Target Start/End: Original strand, 5603588 - 5603743
Alignment:
Q  23 atccttgaaaagatccagcaaagaattttatccactagtttccaatatcttatcctccattgcttccaaaacatgagaggaccaatgacaattccgagac 122  Q
    |||||||| || |||||||||||| |||| ||||| |||||||||||  ||| |||||| ||||||||||||||||  |||  |||||||||||| || |    
T  5603588 atccttgagaaaatccagcaaagagttttgtccacaagtttccaatactttaccctccaatgcttccaaaacatgatgggataaatgacaattccaagcc 5603687  T
Q  123 caaaaacaaaccccaattctacacttaaaaaattccagtctgttgaacaagatagc 178  Q
    ||||||  || |||||||| ||||||| ||||||||||||  ||||||||| ||||    
T  5603688 caaaaatgaatcccaattccacacttataaaattccagtcaattgaacaagctagc 5603743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 44 - 173
Target Start/End: Original strand, 5562911 - 5563040
Alignment:
Q  44 agaattttatccactagtttccaatatcttatcctccattgcttccaaaacatgagaggaccaatgacaattccgagaccaaaaacaaaccccaattcta 143  Q
    |||||||| || || ||||||||||| ||||  ||||||| ||||||||||| ||| ||||||| ||  |||||||| ||||||||||| |||||||| |    
T  5562911 agaattttgtctacgagtttccaataacttactctccatttcttccaaaacaagaggggaccaacgatgattccgagcccaaaaacaaatcccaattcca 5563010  T
Q  144 cacttaaaaaattccagtctgttgaacaag 173  Q
    |||||||||||||||||||  |||||||||    
T  5563011 cacttaaaaaattccagtcaattgaacaag 5563040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 320 - 402
Target Start/End: Complemental strand, 5891047 - 5890965
Alignment:
Q  320 ttcaaatatgaaaggaaggacaagcttgcaagctgcacaggaatttcaccagccaaagtgttatttgagaggtctaaggactc 402  Q
    |||||||| |||||||| |||| |||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||    
T  5891047 ttcaaataagaaaggaatgacatgcttgcaagctgcacaggaatttcaccaaccaaagagttatttgagaggtccaaggactc 5890965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 35 - 176
Target Start/End: Original strand, 5856247 - 5856388
Alignment:
Q  35 atccagcaaagaattttatccactagtttccaatatcttatcctccattgcttccaaaacatgagaggaccaatgacaattccgagaccaaaaacaaacc 134  Q
    ||||||||||||||||| ||||  ||||||||||| | || |||||||||||||||||||||||  |||||||| ||| |||| || ||||||| ||| |    
T  5856247 atccagcaaagaattttgtccatgagtttccaataacctaccctccattgcttccaaaacatgatgggaccaataacacttccaagcccaaaaataaatc 5856346  T
Q  135 ccaattctacacttaaaaaattccagtctgttgaacaagata 176  Q
    | | ||| ||||||||||||||||| ||  || |||||||||    
T  5856347 ctagttccacacttaaaaaattccaatcaattaaacaagata 5856388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 44 - 162
Target Start/End: Original strand, 5611727 - 5611845
Alignment:
Q  44 agaattttatccactagtttccaatatcttatcctccattgcttccaaaacatgagaggaccaatgacaattccgagaccaaaaacaaaccccaattcta 143  Q
    |||||||| || || ||||||||||| ||||  ||||||| |||||||||||  |||||||| ||||  |||||||| ||||||||||| ||||| || |    
T  5611727 agaattttgtctacgagtttccaataacttactctccatttcttccaaaacaaaagaggaccgatgatgattccgagcccaaaaacaaatcccaactcca 5611826  T
Q  144 cacttaaaaaattccagtc 162  Q
    |||||||||||||||||||    
T  5611827 cacttaaaaaattccagtc 5611845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 32 - 162
Target Start/End: Complemental strand, 5850076 - 5849946
Alignment:
Q  32 aagatccagcaaagaattttatccactagtttccaatatcttatcctccattgcttccaaaacatgagaggaccaatgacaattccgagaccaaaaacaa 131  Q
    |||||||| || |||||||| || || ||||||||||| ||||  ||||||| ||||||||||| ||| |||   |||| ||||||||| ||||||||||    
T  5850076 aagatccaacatagaattttgtctacgagtttccaataacttactctccatttcttccaaaacaagaggggagtgatgataattccgagcccaaaaacaa 5849977  T
Q  132 accccaattctacacttaaaaaattccagtc 162  Q
    | ||||| || ||||||||||||||||||||    
T  5849976 atcccaactccacacttaaaaaattccagtc 5849946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 44 - 173
Target Start/End: Complemental strand, 5888275 - 5888146
Alignment:
Q  44 agaattttatccactagtttccaatatcttatcctccattgcttccaaaacatgagaggaccaatgacaattccgagaccaaaaacaaaccccaattcta 143  Q
    |||||||| || || ||||||||||| ||||  ||||||| ||||||||||| ||| ||||||| ||  ||||| || ||||||| ||| |||||||| |    
T  5888275 agaattttgtctacgagtttccaataacttactctccatttcttccaaaacaagaggggaccaacgatgattccaagtccaaaaataaatcccaattcca 5888176  T
Q  144 cacttaaaaaattccagtctgttgaacaag 173  Q
    |||||||||||||||| ||  |||||||||    
T  5888175 cacttaaaaaattccattcaattgaacaag 5888146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 59 - 173
Target Start/End: Original strand, 5551373 - 5551487
Alignment:
Q  59 agtttccaatatcttatcctccattgcttccaaaacatgagaggaccaatgacaattccgagaccaaaaacaaaccccaattctacacttaaaaaattcc 158  Q
    ||||||||||| ||||  ||||||| ||||||||||| ||| ||||  ||||  ||||| || ||||||||||| ||||| || ||||||||||||||||    
T  5551373 agtttccaatagcttactctccatttcttccaaaacaagaggggacagatgatgattccaagcccaaaaacaaatcccaactccacacttaaaaaattcc 5551472  T
Q  159 agtctgttgaacaag 173  Q
    ||||  |||||||||    
T  5551473 agtcaattgaacaag 5551487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 44 - 158
Target Start/End: Complemental strand, 5897138 - 5897024
Alignment:
Q  44 agaattttatccactagtttccaatatcttatcctccattgcttccaaaacatgagaggaccaatgacaattccgagaccaaaaacaaaccccaattcta 143  Q
    |||||||| || || ||||||||||| ||||  ||||||| ||||||||||| ||| ||||||| ||  ||||| || ||||||| ||| |||||||| |    
T  5897138 agaattttgtctacgagtttccaataacttactctccatttcttccaaaacaagaggggaccaacgatgattccaagtccaaaaataaatcccaattcca 5897039  T
Q  144 cacttaaaaaattcc 158  Q
    |||||||||||||||    
T  5897038 cacttaaaaaattcc 5897024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 59 - 172
Target Start/End: Complemental strand, 5891270 - 5891158
Alignment:
Q  59 agtttccaatatcttatcctccattgcttccaaaacatgagaggaccaatgacaattccgagaccaaaaacaaaccccaattctacacttaaaaaattcc 158  Q
    ||||||||||| ||||  ||||||| |||||||| || ||| ||||||||||  |||||||  ||||||||||| ||||| || ||||||||||||||||    
T  5891270 agtttccaataacttactctccatttcttccaaa-caagaggggaccaatgatgattccgaacccaaaaacaaatcccaactccacacttaaaaaattcc 5891172  T
Q  159 agtctgttgaacaa 172  Q
    | ||  ||||||||    
T  5891171 aatcaattgaacaa 5891158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 60 - 173
Target Start/End: Complemental strand, 5855024 - 5854911
Alignment:
Q  60 gtttccaatatcttatcctccattgcttccaaaacatgagaggaccaatgacaattccgagaccaaaaacaaaccccaattctacacttaaaaaattcca 159  Q
    |||||||||| | ||  |||||| |||||||||||| |   ||||||||||  |||||||| ||||||||||| ||||| || | ||| |||||||||||    
T  5855024 gtttccaataacatactctccatcgcttccaaaacaaggtgggaccaatgatgattccgagcccaaaaacaaatcccaactccatactcaaaaaattcca 5854925  T
Q  160 gtctgttgaacaag 173  Q
    |||  |||||||||    
T  5854924 gtcaattgaacaag 5854911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 176
Target Start/End: Complemental strand, 253776 - 253677
Alignment:
Q  77 ctccattgcttccaaaacatgagaggaccaatgacaattccgagaccaaaaacaaaccccaattctacacttaaaaaattccagtctgttgaacaagata 176  Q
    |||||||| ||| |||| || || | |||||||| |||||| || ||||||||||| || | ||| | ||||||||||||||| ||  ||||||||||||    
T  253776 ctccattgtttcaaaaatataagggaaccaatgaaaattccaagcccaaaaacaaatccaagttccatacttaaaaaattccaatcaattgaacaagata 253677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 125; Significance: 4e-64; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 194 - 470
Target Start/End: Original strand, 1481522 - 1481798
Alignment:
Q  194 ttaccatctggtttttcagtcaatggaggtccatatagcccatcatttccttcaaaagaagaagactgaaacgactgaagttgagtacctgttgggatct 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||| ||||||||||||||||||||||| |||     
T  1481522 ttaccatctggtttttcagtcaatggaggtccatatagcccatcatttccttcaaatgaagaagccggaaatgactgaagttgagtacctgttggaatca 1481621  T
Q  294 tccccatcaaatgattgaaggaaagattcaaatatgaaaggaaggacaagcttgcaagctgcacaggaatttcaccagccaaagtgttatttgagaggtc 393  Q
    |||| | |||||||||||| || || |||||||| ||||| || |||| || | ||| |||||||||||||| |||   ||||| |||||||||||||||    
T  1481622 tccctaccaaatgattgaaagagaggttcaaataagaaagaaatgacatgcatacaatctgcacaggaattttaccgaacaaagagttatttgagaggtc 1481721  T
Q  394 taaggactccaattgtttcaagttccctatggaagatgggatttttcctgagagacggttgtttgaaatgttgagaa 470  Q
    ||||||||| || ||||||| |||||| || |  ||||||||||  || |||| |   |||||||||| ||||||||    
T  1481722 taaggactctaactgtttcaggttcccaatagtcgatgggatttcaccggagaaagcattgtttgaaaagttgagaa 1481798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 23 - 162
Target Start/End: Original strand, 1481330 - 1481469
Alignment:
Q  23 atccttgaaaagatccagcaaagaattttatccactagtttccaatatcttatcctccattgcttccaaaacatgagaggaccaatgacaattccgagac 122  Q
    ||||||||||||||||||||||||||||| ||||| | || |||||| |||| |||||||||||||||| |||||| |||| | ||||  ||||| || |    
T  1481330 atccttgaaaagatccagcaaagaattttgtccacaacttgccaataccttaccctccattgcttccaagacatgataggaacgatgatgattcctagtc 1481429  T
Q  123 caaaaacaaaccccaattctacacttaaaaaattccagtc 162  Q
    | |||| ||| || ||||| ||||||| ||||||||||||    
T  1481430 cgaaaataaatcctaattccacacttagaaaattccagtc 1481469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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