View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10374_low_10 (Length: 376)
Name: NF10374_low_10
Description: NF10374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10374_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 30778393 - 30778754
Alignment:
| Q |
1 |
aaaatcaaaagctaagttgcaatttttgcttgtccaccgatgatgaaaatcaaaggctaagttgttaattttcgattgtaaccatctaaaagaagaaaac |
100 |
Q |
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| T |
30778393 |
aaaatcaaaagctacgttgcaatttttgcttgtccaccgatgatgaaaatcaaaagctaagttgttaattttcggttgtaaccatctaaaagaagaaaat |
30778492 |
T |
|
| Q |
101 |
ttcacgatgttcaccggttgctgtatcgattgatctatatgtcgaaaaatacgactattcttgtccttccaaac-tcttaaacaaccgacaactaaatca |
199 |
Q |
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|||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
30778493 |
ttcacgatattcaccggttgttgtatcgattg-tctatatgtcgaaaaatacgactattcttatccttccaaatatcttaaacaaccgacaactaaatca |
30778591 |
T |
|
| Q |
200 |
catggagacgtcttcttccacggttaccctagcctatcaatcccccatgctagcctcctaatctccactaaggtaacatctttatcaaacgtaaatcaaa |
299 |
Q |
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||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
30778592 |
catggagacgtcttcttccaccgctatcctagcctatcaatcccccatgctagcctcctaatctccactaaggtaacacctttatcaaacgtaaatcaaa |
30778691 |
T |
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| Q |
300 |
aagacgccaaaacctaacccacaaacttgcaccatgcagtcaaagatcacaccaaaatgatgt |
362 |
Q |
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| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
30778692 |
aggacgccaaaacctaacccacaaaccttcaccatgcagtcaaagatcacaccaaaatgatgt |
30778754 |
T |
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