View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10374_low_11 (Length: 370)
Name: NF10374_low_11
Description: NF10374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10374_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 18 - 360
Target Start/End: Complemental strand, 30616579 - 30616237
Alignment:
| Q |
18 |
gttaattcttagggactaagttttcctgcttcttttgtccctggactaaaagttgattttgaatttttcagagaccagattgagtctcgcagttaaaatg |
117 |
Q |
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| T |
30616579 |
gttaattcttaggggctaagttttcctgcttcttttgtcccgggactaaaagttgattttgaatttttcagagaccagattgagtctagcagttaaaatg |
30616480 |
T |
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| Q |
118 |
gttaggatgactcttaaaaaagtatggacaagttagcataacataacaaaaacattttgcattttcccaatttttgcagagaagtagaaacattttaata |
217 |
Q |
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| T |
30616479 |
gttaggatgactcttaaaaaagtatggacaagttagcataacataacaaaaacattttgcattttcccaatttttgcagagaagtagaaacattttaata |
30616380 |
T |
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| Q |
218 |
tagcgagacggggaaggaaaaacattgaggcatggcaagggagaatctcagggtgctaagtgcactagatgtagcaagaacacaatgttaccattttaca |
317 |
Q |
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| T |
30616379 |
tagcgagacggggaaggaaaaacattgaggcatggcaagggagaatctcagggtgctaagtgcactagatgtagcaagaacacaatgttaccattttaca |
30616280 |
T |
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| Q |
318 |
gcaattgccattactggaatgggcttcttcaccaatgcctatg |
360 |
Q |
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| T |
30616279 |
gcaattgccattactggactgggcttcttcaccaatgcatatg |
30616237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 236 - 355
Target Start/End: Complemental strand, 30621112 - 30620993
Alignment:
| Q |
236 |
aaaacattgaggcatggcaagggagaatctcagggtgctaagtgcactagatgtagcaagaacacaatgttaccattttacagcaattgccattactgga |
335 |
Q |
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| T |
30621112 |
aaaacattgaggcatggctaaggagaatctccaggtgctaaatgcactagatgtagcgaaaacacaatggtaccatttcacagcaattgtcatagctgga |
30621013 |
T |
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| Q |
336 |
atgggcttcttcaccaatgc |
355 |
Q |
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| T |
30621012 |
atgggcttcttcaccgatgc |
30620993 |
T |
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