View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10374_low_13 (Length: 258)
Name: NF10374_low_13
Description: NF10374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10374_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 5509720 - 5509480
Alignment:
| Q |
1 |
gcaatttctggaattgggcttggttttatagggattgtggtaactgaaagttttctagtagtgatttttctctcttttgggacaatggtagcaatgttta |
100 |
Q |
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| T |
5509720 |
gcaatttctggaattggggttggttttatagggattgtggtaactgaaagttttctaatagtgatttttctctcttttgggacaatggtagcaatgttta |
5509621 |
T |
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| Q |
101 |
tgatattgttatggttgaaaaatccaagctttttcatggattctaaatgggaagacacaaagttcaaacttttatcagaaaaatgtgaaaactttgaact |
200 |
Q |
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| T |
5509620 |
tgatattgttatggttgaaaaatccaagctttttcatggattctaaatgggaagacacaaagttcaaacttttatcagaaaaatgtgaaaactttgaact |
5509521 |
T |
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| Q |
201 |
tggtatgagagaaaatgttgagttaacagtttgaagaaact |
241 |
Q |
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| T |
5509520 |
tggtatgagagaaaatgttgagttaacagtttgaagaaact |
5509480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 34 - 241
Target Start/End: Complemental strand, 20432989 - 20432784
Alignment:
| Q |
34 |
attgtggtaactgaaagttttctagtagtgatttttctctcttttgggacaatggtagcaatgtttatgatattgttatggttgaaaaatccaagctttt |
133 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| | || |||||||||||||||||| |
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| T |
20432989 |
attgtggtaactgaaagttttctagtagtgatttttatctcttttggtacaatggtagcaatgtttatgatattggt--ggctgaaaaatccaagctttt |
20432892 |
T |
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| Q |
134 |
tcatggattctaaatgggaagacacaaagttcaaacttttatcagaaaaatgtgaaaactttgaacttggtatgagagaaaatgttgagttaacagtttg |
233 |
Q |
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||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
20432891 |
tcatggattctaaatgggaagacacaaagtttgaacctttatcagaaaaatgtgaaaaccttgaacttggtatgagagaaaatgttgagttaacagtttg |
20432792 |
T |
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| Q |
234 |
aagaaact |
241 |
Q |
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|||||||| |
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| T |
20432791 |
aagaaact |
20432784 |
T |
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