View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10374_low_15 (Length: 248)
Name: NF10374_low_15
Description: NF10374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10374_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 99; Significance: 6e-49; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 68 - 238
Target Start/End: Complemental strand, 18161104 - 18160931
Alignment:
| Q |
68 |
taatgcaggaatttaagaatcagaaacacaataaaatacactgtcagtggagtcaactctt-ctagctacattatattctgcttaattcattctttc--c |
164 |
Q |
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| T |
18161104 |
taatgcaggaatttaagaatcagaaatgcaataaaatacactgtcagtggagtcaaccctggctacattcattatattctgcttaattcattatttctcc |
18161005 |
T |
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| Q |
165 |
tttcattcagtacataaggtagagaataataagacagcttcctagcaaataacagttgtatgcaatagcctatg |
238 |
Q |
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| T |
18161004 |
tttcattctgtacataaggtagaaaataataagacagcttccttgaaaataacagttgtatacaattgcctatg |
18160931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 18161309 - 18161265
Alignment:
| Q |
6 |
tagattatttctcttcttattctttatcaagaaagcaccctaagg |
50 |
Q |
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| T |
18161309 |
tagattatttctcttcttattctttatcaaaaaagcaccctaagg |
18161265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 163
Target Start/End: Complemental strand, 19407263 - 19407206
Alignment:
| Q |
103 |
atacactgtcagtggagtcaactcttctagctacattatattctgcttaattcattctttc |
163 |
Q |
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| T |
19407263 |
atacactgtccgtggagtcaactctg---gcaacattatattctgcttaattcattatttc |
19407206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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