View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10374_low_18 (Length: 227)
Name: NF10374_low_18
Description: NF10374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10374_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 102 - 212
Target Start/End: Complemental strand, 6178854 - 6178744
Alignment:
| Q |
102 |
aagggcatcaacgcactataattggcatccaacctaatattggctaaaacaaaagcatccgaccgaatattgcatatgctcgtgttaagtcactgctgaa |
201 |
Q |
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| T |
6178854 |
aagggcatcaacgcactataattggcatccaacctaatgttggctaaaacaaaagcatccgacctaatattgcatatgctcgtgttaagtcactgctgaa |
6178755 |
T |
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| Q |
202 |
ctctaaacaac |
212 |
Q |
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||||||||||| |
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| T |
6178754 |
ctctaaacaac |
6178744 |
T |
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Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 6178959 - 6178882
Alignment:
| Q |
1 |
cacctatatgcaagtaacttcataacac-------gttcttgagtcatgttgactaagtggaaccttcctaccacttg |
71 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
6178959 |
cacctatatgcaagtaacttcataacacccttcctgttcttgagtcatgttgaccatgtggaaccttcctaccacttg |
6178882 |
T |
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