View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10374_low_19 (Length: 207)
Name: NF10374_low_19
Description: NF10374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10374_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 151; Significance: 4e-80; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 40285380 - 40285588
Alignment:
| Q |
1 |
ttcggaatagaagaatgtctgtggatcaatagggagacacatgcggggtgttgatggcgtgtattcagatggtaaaggcttagggggtggtggtgatgaa |
100 |
Q |
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| T |
40285380 |
ttcggaatagaagaatgtctgtggatcaatagggagacgcgtgcggggtgttgatggtgtgtattcagatggtaaatgcttagggagtggtggtgatgaa |
40285479 |
T |
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| Q |
101 |
gatgcgtcgacaatgtcatgatgaggagcatta---tcatcacatgaaagtgcagcatgatcaccatggttcataatctttgagttatcactgttgagtt |
197 |
Q |
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| T |
40285480 |
gatgcgtcgataatgtcatgaggaggagcatcatcttcatcacatgaaagtgcagcatgatcagcatggttcatcatctttgagttatcactgatgagtt |
40285579 |
T |
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| Q |
198 |
gtttcttct |
206 |
Q |
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||||||||| |
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| T |
40285580 |
gtttcttct |
40285588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 101 - 206
Target Start/End: Complemental strand, 40457690 - 40457582
Alignment:
| Q |
101 |
gatgcgtcgacaatgtcatgatgaggagcattatc---atcacatgaaagtgcagcatgatcaccatggttcataatctttgagttatcactgttgagtt |
197 |
Q |
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| T |
40457690 |
gatgcgtcgataatgtcatgaggaggagcatcatcttcatcacatgaaagtgcagcatgatcagcatggttcatcatctttgagttatcactgatgagtt |
40457591 |
T |
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| Q |
198 |
gtttcttct |
206 |
Q |
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| T |
40457590 |
gtttcttct |
40457582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 45 - 104
Target Start/End: Complemental strand, 40457869 - 40457810
Alignment:
| Q |
45 |
ggggtgttgatggcgtgtattcagatggtaaaggcttagggggtggtggtgatgaagatg |
104 |
Q |
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| T |
40457869 |
ggggtgatgatggtgtgtattcagatggtaaaggcttatggagtggtggtgatgaagatg |
40457810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 45 - 104
Target Start/End: Original strand, 40280481 - 40280540
Alignment:
| Q |
45 |
ggggtgttgatggcgtgtattcagatggtaaaggcttagggggtggtggtgatgaagatg |
104 |
Q |
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| T |
40280481 |
ggggtgatgatggtgtccattcagatgggaaaggcttaggaagtggtggtgatgaagatg |
40280540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 40280654 - 40280712
Alignment:
| Q |
46 |
gggtgttgatggcgtgtattcagatggtaaaggcttagggggtggtggtgatgaagatg |
104 |
Q |
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| T |
40280654 |
gggtgatgatggtgtccattcagatgggaaaggcttaggaagtggtggtgatgaagatg |
40280712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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