View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10374_low_2 (Length: 522)
Name: NF10374_low_2
Description: NF10374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10374_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 18 - 513
Target Start/End: Complemental strand, 24059177 - 24058682
Alignment:
| Q |
18 |
aatatgtaccccattgatggtctgttcactcgacgctcctccaagcacttccaagccaactctaaaaccttgtttacagactccatattcactttgccag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
24059177 |
aatatgtaccccattgatggtctgttcactcgacgctcctccaagcacttccaagccagctctaaaaccttgtttacagactccatattcactttgccag |
24059078 |
T |
|
| Q |
118 |
tcaaataagggtccatcatttcatgaaaagtaccctttttattgcagcttaatgcccaaaatgccaaattcatctgctgcgttggaagggcatcatctag |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24059077 |
tcaaataagggtccatcatttcatgaaaagtgccctttttatggcagcttaatgcccaaaatgccaaattcatctgctgcgttggaagggcatcatctag |
24058978 |
T |
|
| Q |
218 |
agcaggcttcccacatataacttcaagcaacaccaccccgaacgagtaaacatctgatttcttagtaagaaatttagtcctaaaatattctggatcaaga |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24058977 |
agcaggcttcccacatataacttcaagcaacaccaccccgaacgagtaaacatctgatttcttagtaagaaatttagtcctaaaatattctggatcaaga |
24058878 |
T |
|
| Q |
318 |
tagccgaagctaccctttacatgggttgtaacgtggctcttatcaagaagaggacccttttttgatatgccaaaatcagcaacttttggcacaaggtttt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24058877 |
tagccgaagctaccctttacatgggttgtaacgtggctcttatcaagaagaggacccttttttgatatgccaaaatcagcaacttttggcacaaggtttt |
24058778 |
T |
|
| Q |
418 |
catccaagagaatgtttgttgttttcacatcacggtgaattatgctttgtttagctccagtgtgaagataaagaagtcctttcgcagcccctatgc |
513 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
24058777 |
catccaagagaatgtttgttgtcttcacatcacggtgaattatgctttgtttagctccagtgtgaagataaagaagtcctttcgcagccccgatgc |
24058682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 24 - 496
Target Start/End: Complemental strand, 14685459 - 14684987
Alignment:
| Q |
24 |
taccccattgatggtctgttcactcgacgctcctccaagcacttccaagccaactctaaaaccttgtttacagactccatattcactttgccagtcaaat |
123 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||| |
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| T |
14685459 |
taccccattgatggtctgttctccggacgctcctccaagcacttccaagccaactctaaaaccttgtttagagaatccatattcactttgccaatcaaaa |
14685360 |
T |
|
| Q |
124 |
aagggtccatcatttcatgaaaagtaccctttttattgcagcttaatgcccaaaatgccaaattcatctgctgcgttggaagggcatcatctagagcagg |
223 |
Q |
| |
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| |||||||||||||||||||| ||||||||||||| ||| ||||||||||| | ||||||||||||||| |||||||||||||||||||||| |||||| |
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|
| T |
14685359 |
atgggtccatcatttcatgaaaggtaccctttttatcgcaacttaatgcccacattgccaaattcatctgttgcgttggaagggcatcatctaaagcagg |
14685260 |
T |
|
| Q |
224 |
cttcccacatataacttcaagcaacaccaccccgaacgagtaaacatctgatttcttagtaagaaatttagtcctaaaatattctggatcaagatagccg |
323 |
Q |
| |
|
|| |||||||||||||||| ||||||||| || || ||| ||||||||||||||||||| |||||| |||||||||||||||| ||||||| |||||| |
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| T |
14685259 |
ttttccacatataacttcaatcaacaccactccaaaagagaaaacatctgatttcttagttagaaatgtagtcctaaaatattcaggatcaacatagcca |
14685160 |
T |
|
| Q |
324 |
aagctaccctttacatgggttgtaacgtggctcttatcaagaagaggacccttttttgatatgccaaaatcagcaacttttggcacaaggttttcatcca |
423 |
Q |
| |
|
|| ||||||||||||| ||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||| |||| |
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|
| T |
14685159 |
aaactaccctttacattcgttgtaacgtgactcttatcaagaattggaccctttttcgatatgccaaaatcagcaacttttggcacaagattttcgtcca |
14685060 |
T |
|
| Q |
424 |
agagaatgtttgttgttttcacatcacggtgaattatgctttgtttagctccagtgtgaagataaagaagtcc |
496 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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|
| T |
14685059 |
agagaatgtttgctgtcttcacatcacggtgaattatgctttgtttagctccagtgtgaagatataaaagtcc |
14684987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 24 - 510
Target Start/End: Original strand, 14670854 - 14671340
Alignment:
| Q |
24 |
taccccattgatggtctgttcactcgacgctcctccaagcacttccaagccaactctaaaaccttgtttacagactccatattcactttgccagtcaaat |
123 |
Q |
| |
|
|||||||| | |||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||| |||||| |
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|
| T |
14670854 |
taccccatcggtggtctgttctcccgacgctcctccaagcacttccatgccaactctaaaaccttgtttagagaatccatattcactttgccaatcaaat |
14670953 |
T |
|
| Q |
124 |
aagggtccatcatttcatgaaaagtaccctttttattgcagcttaatgcccaaaatgccaaattcatctgctgcgttggaagggcatcatctagagcagg |
223 |
Q |
| |
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| |||||||||||||||||||| ||||||||||||| ||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
14670954 |
atgggtccatcatttcatgaaaggtaccctttttatcgcaacttaatgcccacaatgccaaattcatctgttgcgttggaagggcatcatctaaagcagg |
14671053 |
T |
|
| Q |
224 |
cttcccacatataacttcaagcaacaccaccccgaacgagtaaacatctgatttcttagtaagaaatttagtcctaaaatattctggatcaagatagccg |
323 |
Q |
| |
|
|| |||||||||||||||| ||||||||| || || ||| ||||||||||||||||||| ||||| ||||||||||||||||| ||||||| |||||| |
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| T |
14671054 |
ttttccacatataacttcaatcaacaccactccaaaagagaaaacatctgatttcttagttagaaacttagtcctaaaatattcaggatcaacatagcca |
14671153 |
T |
|
| Q |
324 |
aagctaccctttacatgggttgtaacgtggctcttatcaagaagaggacccttttttgatatgccaaaatcagcaacttttggcacaaggttttcatcca |
423 |
Q |
| |
|
|| ||||||||||||| ||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||| ||||| |||| |
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|
| T |
14671154 |
aaactaccctttacattagttgtaacgtgactcttatcaagaataggaccctttttcgatatgccaaaatcagcaacttttggtacaagattttcgtcca |
14671253 |
T |
|
| Q |
424 |
agagaatgtttgttgttttcacatcacggtgaattatgctttgtttagctccagtgtgaagataaagaagtcctttcgcagccccta |
510 |
Q |
| |
|
|||||||||||||||| || | ||||||||||||||||||| ||||||||||||||||||||| | |||||| || |||||||||| |
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| T |
14671254 |
agagaatgtttgttgtctttatgtcacggtgaattatgctttctttagctccagtgtgaagatataaaagtccctttgcagccccta |
14671340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 24 - 289
Target Start/End: Complemental strand, 14705149 - 14704884
Alignment:
| Q |
24 |
taccccattgatggtctgttcactcgacgctcctccaagcacttccaagccaactctaaaaccttgtttacagactccatattcactttgccagtcaaat |
123 |
Q |
| |
|
|||||||| | |||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||| |||||| |
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|
| T |
14705149 |
taccccatcggtggtctgttctcccgacgctcctccaagcacttccatgccaactctaaaaccttgtttagagaatccatattcactttgccaatcaaat |
14705050 |
T |
|
| Q |
124 |
aagggtccatcatttcatgaaaagtaccctttttattgcagcttaatgcccaaaatgccaaattcatctgctgcgttggaagggcatcatctagagcagg |
223 |
Q |
| |
|
| |||||||||||||||||||| ||||||||||||| ||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||| |
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|
| T |
14705049 |
atgggtccatcatttcatgaaaggtaccctttttatcgcaacttaatgcccacaatgccaaattcatctgttgcgttggaagggcatcatctaaagcagg |
14704950 |
T |
|
| Q |
224 |
cttcccacatataacttcaagcaacaccaccccgaacgagtaaacatctgatttcttagtaagaaa |
289 |
Q |
| |
|
|| |||||||||||||||| ||||||||| || | ||| ||||||||||||||||||| ||||| |
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|
| T |
14704949 |
ttttccacatataacttcaatcaacaccactccataagagaaaacatctgatttcttagttagaaa |
14704884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 24 - 510
Target Start/End: Complemental strand, 30730966 - 30730480
Alignment:
| Q |
24 |
taccccattgatggtctgttcactcgacgctcctccaagcacttccaagccaactctaaaaccttgtttacagactccatattcactttgccagtcaaat |
123 |
Q |
| |
|
|||||||| | |||||||||| | ||||||||||||||||||||||| ||||||| |||||||||||||| ||| |||||||||||||||||| |||||| |
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|
| T |
30730966 |
taccccatcggtggtctgttctcccgacgctcctccaagcacttccatgccaactataaaaccttgtttagagaatccatattcactttgccaatcaaat |
30730867 |
T |
|
| Q |
124 |
aagggtccatcatttcatgaaaagtaccctttttattgcagcttaatgcccaaaatgccaaattcatctgctgcgttggaagggcatcatctagagcagg |
223 |
Q |
| |
|
| |||||||||||||||||||| ||||||||||||| ||| |||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||| |
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|
| T |
30730866 |
atgggtccatcatttcatgaaaggtaccctttttatcgcaacttaatgcccgcaatgccaaattcatctgttgcgttggaagggcatcatctaaagcagg |
30730767 |
T |
|
| Q |
224 |
cttcccacatataacttcaagcaacaccaccccgaacgagtaaacatctgatttcttagtaagaaatttagtcctaaaatattctggatcaagatagccg |
323 |
Q |
| |
|
|| |||||||||||||||| ||||||||| || || ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
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|
| T |
30730766 |
ttttccacatataacttcaatcaacaccactccaaaagagaaaacatctgatttcttagttagaaatttagtcctaaaatattctggatcaacttagcca |
30730667 |
T |
|
| Q |
324 |
aagctaccctttacatgggttgtaacgtggctcttatcaagaagaggacccttttttgatatgccaaaatcagcaacttttggcacaaggttttcatcca |
423 |
Q |
| |
|
|| ||||||||||||| ||||||||||| ||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||| |||| |||| |
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|
| T |
30730666 |
aaactaccctttacattagttgtaacgtgactcttatcaagaataggaccctttttcgatatgccaaaatcagaaacttttggcacaatctttttgtcca |
30730567 |
T |
|
| Q |
424 |
agagaatgtttgttgttttcacatcacggtgaattatgctttgtttagctccagtgtgaagataaagaagtcctttcgcagccccta |
510 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| | |||||| || |||||||||| |
|
|
| T |
30730566 |
agagaatgtttgttgtcttcacgtcacggtgaattatgctttgtttagctccagtgtgaagatataaaagtccctttgcagccccta |
30730480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 466
Target Start/End: Complemental strand, 33872813 - 33872733
Alignment:
| Q |
386 |
gccaaaatcagcaacttttggcacaaggttttcatccaagagaatgtttgttgttttcacatcacggtgaattatgctttg |
466 |
Q |
| |
|
|||||| ||||||||||| | |||| ||| ||||| || ||||||||||| || || ||||| ||||||||||| ||||| |
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|
| T |
33872813 |
gccaaagtcagcaactttagcaacaaagttatcatctaaaagaatgtttgtcgtctttacatctcggtgaattatactttg |
33872733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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