View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10374_low_5 (Length: 443)
Name: NF10374_low_5
Description: NF10374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10374_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 19 - 428
Target Start/End: Complemental strand, 54974245 - 54973831
Alignment:
| Q |
19 |
ttagtgccgtttgtaacaaaactggtggatacaattgtatttggataacgtggcccaatcctccaatgcgtagtgatatgatatctatgcatgtatgaaa |
118 |
Q |
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| T |
54974245 |
ttagtgccgtttgtaacaaaactggtggatacaattgtatttggataacgtggcccaatcttcaaatgcgtagtgatatgatatctatgcatgtatgaaa |
54974146 |
T |
|
| Q |
119 |
atctcaactcactctatacactacacaaccttcatgtgtgtgtaggacattgatttcaaacacggacaagaagaaaaaggtccttcattaacaactctaa |
218 |
Q |
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| T |
54974145 |
atctcaactcactctatacactacacaaccttcatgtgt----aggacattgatttcaaacacggacaagaagaaaaaggtccttcattaacaactctaa |
54974050 |
T |
|
| Q |
219 |
ttcccattctgtccctcctccggtgaccggaaaaaatggcagtctctgccagtggtcagttaatgctatcctctacagttcagctacgtgagccaggaat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54974049 |
ttcccattctgtccctcctccggtgaccggaaaaaatggcagtctctgccagtggtcagttaatgctatcctctacagttcagctacgtgagccaggaat |
54973950 |
T |
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| Q |
319 |
ggtgagcagtaggaactt---------gaagttttgtaatggagaaatgatgggacgaaagattgagcttcatgctgctaccaatggttgcactaagaat |
409 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54973949 |
ggtgagcagtaggaacttgaaggttgtgaagttttgtaatggagaaatgatgggacgaaagattgagcttcatgctgctaccaatggttgcactaagaat |
54973850 |
T |
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| Q |
410 |
gtttataggaaaaatatat |
428 |
Q |
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| T |
54973849 |
gtttataggaaaaatatat |
54973831 |
T |
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