View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10374_low_7 (Length: 395)
Name: NF10374_low_7
Description: NF10374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10374_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 351; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 12 - 378
Target Start/End: Complemental strand, 1374206 - 1373840
Alignment:
| Q |
12 |
caaaggcaacttccacattgtccagtaacgtccgtcgtagtatcctggtgaactgtggttctcacggtacacaaatcctttctgcaagtaagcaagtaga |
111 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1374206 |
caaaggcaacttccacattgtccagtaacgtccgtcatagtatcctggtgaactgtggttctcacggtacacaaatcctttctgcaagtaagcaagtaga |
1374107 |
T |
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| Q |
112 |
agtcaaaacaaacatatgttaaccatcaaaactcaaatggattttaaataaaggtccgtgaccacaatcagggtcgcgacataacggtttttgatgttat |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
1374106 |
agtcaaaacaaacatatgttaaccatcaaaactcaaatggattttaaataaaggtccgtgaccacgatcagggtcgcgacataacggtttttgatgttat |
1374007 |
T |
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| Q |
212 |
tgaaaccgcagttcgacagcaattgaggccacatcggccacacacaaattaaaagggttttaaatacaaatttgtgactgtgaccttggccgcgacaaaa |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1374006 |
tgaaaccgcagttcgacagcaattgaggccacatcggccacacacaaattaaaagggttttaaatacaaatttgtgactgtgaccttggccgtgacaaaa |
1373907 |
T |
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| Q |
312 |
caacgattattaatattgagaagatattgcaagtaatattagacctcggtctcaaattccaagcaag |
378 |
Q |
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| T |
1373906 |
caacgattataaatattgagaagatattgcaagtaatattagacctcggtctcaaattccaagcaag |
1373840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 1358654 - 1358565
Alignment:
| Q |
12 |
caaaggcaacttccacattgtccagtaacgtccgtcgtagtatcctggtgaactgtggttctcacggtacacaaatcctttctgcaagta |
101 |
Q |
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| T |
1358654 |
caaaggcaacttccacattgtccagtaacgtccgtcatagtatcctggtgaactgtggttctcacggtacacaaatcctttctgcaagta |
1358565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 1394753 - 1394664
Alignment:
| Q |
12 |
caaaggcaacttccacattgtccagtaacgtccgtcgtagtatcctggtgaactgtggttctcacggtacacaaatcctttctgcaagta |
101 |
Q |
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| T |
1394753 |
caaaggcaacttccacattgtccagtaacgtccgtcatagtatcctggtgaactgtggttctcacggtacacaaatcctttctgcaagta |
1394664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 1350748 - 1350659
Alignment:
| Q |
12 |
caaaggcaacttccacattgtccagtaacgtccgtcgtagtatcctggtgaactgtggttctcacggtacacaaatcctttctgcaagta |
101 |
Q |
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| T |
1350748 |
caaaggcaacttccacattgtccagtaacgtccgtcataatatcctggtgaactgtggttctcacggtacacaaatcctttctgcaagta |
1350659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 1384402 - 1384313
Alignment:
| Q |
12 |
caaaggcaacttccacattgtccagtaacgtccgtcgtagtatcctggtgaactgtggttctcacggtacacaaatcctttctgcaagta |
101 |
Q |
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|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1384402 |
caaaggcaacttccacattgtccagtaacgtccgtcataatatcctggtgaactgtggttctcacggtacacaaatcctttctgcaagta |
1384313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 1390507 - 1390418
Alignment:
| Q |
12 |
caaaggcaacttccacattgtccagtaacgtccgtcgtagtatcctggtgaactgtggttctcacggtacacaaatcctttctgcaagta |
101 |
Q |
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| T |
1390507 |
caaaggcaacttccacattgtccagtaacgtccgtcataatatcctggtgaactgtggttctcacggtacacaaatcctttctgcaagta |
1390418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 12 - 94
Target Start/End: Complemental strand, 7007319 - 7007237
Alignment:
| Q |
12 |
caaaggcaacttccacattgtccagtaacgtccgtcgtagtatcctggtgaactgtggttctcacggtacacaaatcctttct |
94 |
Q |
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||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
7007319 |
caaaggcaacttccacattgtccagtaacgtccatcatagtatcctggtgaactgtggttctcacggtagacaaatcctttct |
7007237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 12 - 94
Target Start/End: Complemental strand, 7010397 - 7010315
Alignment:
| Q |
12 |
caaaggcaacttccacattgtccagtaacgtccgtcgtagtatcctggtgaactgtggttctcacggtacacaaatcctttct |
94 |
Q |
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||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
7010397 |
caaaggcaacttccacattgtccagtaacgtccatcatagtatcctggtgaactgtggttctcacggtagacaaatcctttct |
7010315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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