View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10374_low_9 (Length: 388)
Name: NF10374_low_9
Description: NF10374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10374_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 121 - 378
Target Start/End: Complemental strand, 4272215 - 4271934
Alignment:
| Q |
121 |
atgcatgcatacatatatata--ggaaggtattgagtgagaccatgagccctgtgatgttaatattgatcattcatctacaactaaatgagtattggctc |
218 |
Q |
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| T |
4272215 |
atgcatgcatacatatatatataggaaggtattgagtgagaccatgagccctgtgatgttaatattgatcattcatctacaattaaatgagtattggctc |
4272116 |
T |
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| Q |
219 |
ctgctacannnnnnncatctagaattaatgttgctattttgaaattattcagaagttttcaaact----------------------tcaattacaaatc |
296 |
Q |
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| T |
4272115 |
ctgctacatttttttcatctagaattaatgttgctattttgaaattattcagaagttttcaaacttttatcatattaactctatatatcaattacaaatc |
4272016 |
T |
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| Q |
297 |
aagagacatgtgcgaatagacgaattttagttaattgtcaaaataacttcactcataatcatatcgtacatacttccctttg |
378 |
Q |
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| T |
4272015 |
aagagacatgtgcgaatagacgaattttagttaattgtcaaaataacttcactcataatcatatcgtacatatttccctttg |
4271934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 4272289 - 4272214
Alignment:
| Q |
18 |
cttgactgcttgatgtaggagataattatatcagttctataagccactgtaaacattgttattttaggtcaaaaat |
93 |
Q |
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| T |
4272289 |
cttgactgcttgaagtaggagataattatatcagttctataagccattataaacattgttattttaggtcaaaaat |
4272214 |
T |
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