View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10375_3 (Length: 300)
Name: NF10375_3
Description: NF10375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10375_3 |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 11687056 - 11687344
Alignment:
| Q |
1 |
aatctaagtttacattttacaagcataatcaattattttctatgcttaaaacagtgaaagtttatacacaccacattcatatttcagaacatacctattg |
100 |
Q |
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| T |
11687056 |
aatctaagtttacattttacaagcataatcaattattttctatgcttaaagcagtgaaagtttatacacaccacattcatatttcagaacatacctattg |
11687155 |
T |
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| Q |
101 |
tgccacaggacaatagttatgtttaatatcttgaaaa-aataaaatatctcttaacaggtgaaaataattgtaacatataggtataggtatagaaacaaa |
199 |
Q |
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| T |
11687156 |
tgccacaggacaatagttatgtttaatatcttgaaaaaaataaaatatctcttaacaggtgaaaataattgtaacatataggtatgggtatagaaacaaa |
11687255 |
T |
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| Q |
200 |
atcaaagctacataggttattacttattacattagatcctttttgactaatcaattatctatcatcaaagtaataaaaatattgatatt |
288 |
Q |
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| T |
11687256 |
atcaaagctacataggttattacttattacattagatcttctttgactaatcaataatctatcatcaaagtaataaaaatattgatatt |
11687344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 11691078 - 11691118
Alignment:
| Q |
1 |
aatctaagtttacattttacaagcataatcaattattttct |
41 |
Q |
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| T |
11691078 |
aatctaagtttacattttacaagcataatcaatgattttct |
11691118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 11634730 - 11634661
Alignment:
| Q |
1 |
aatctaagtttacattttacaagcataatcaattattttctatgcttaaaacagtgaaagtttatacaca |
70 |
Q |
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||||||| ||||||||||||||| ||||||||| ||| |||||| | |||| |||||| |||||||||| |
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| T |
11634730 |
aatctaaatttacattttacaagaataatcaatgattgtctatggtccaaacggtgaaaatttatacaca |
11634661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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