View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10376_high_12 (Length: 242)
Name: NF10376_high_12
Description: NF10376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10376_high_12 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 54303362 - 54303585
Alignment:
| Q |
19 |
acactggctggggtaaactagatgaaattcgaaggcaaatcttaaatttcagaaaatcaggaaaacttatctttgcttatgtccctgacattggagtaaa |
118 |
Q |
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| T |
54303362 |
acactggttggggtaaactagatgaaattcgaaggcaaatcttaaatttcagaaaatcaggaaaacttatctttgcttatgtccctgaaattggagtaaa |
54303461 |
T |
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| Q |
119 |
agagtattacgtcgctagtgcatgtaaagaaatatttgcccatcctttcgttgaggttcatttgtatggacccactgttgacaaatttagttttattaag |
218 |
Q |
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| T |
54303462 |
agagtattacgtcgctagtgcatgtaaagaaatatttgcccatcctttagttgaggttcatttgtatggacccactgttgacaaatttagttttattaag |
54303561 |
T |
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| Q |
219 |
ggtgtttatcacaactttgacttt |
242 |
Q |
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||||||||| |||||||||||||| |
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| T |
54303562 |
ggtgtttattacaactttgacttt |
54303585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 40 - 149
Target Start/End: Original strand, 47292468 - 47292577
Alignment:
| Q |
40 |
atgaaattcgaaggcaaatcttaaatttcagaaaatcaggaaaacttatctttgcttatgtccctgacattggagtaaaagagtattacgtcgctagtgc |
139 |
Q |
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| T |
47292468 |
atgaaattcgaaaggaaatcatgaatttcagaaaatcaggaaaacttattgttgcttatgtccctgcaataggaggaaaagaatattacattgcttgtgc |
47292567 |
T |
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| Q |
140 |
atgtaaagaa |
149 |
Q |
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|||| ||||| |
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| T |
47292568 |
atgtgaagaa |
47292577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 27 - 151
Target Start/End: Complemental strand, 56209744 - 56209620
Alignment:
| Q |
27 |
tggggtaaactagatgaaattcgaaggcaaatcttaaatttcagaaaatcaggaaaacttatctttgcttatgtccctgacattggagtaaaagagtatt |
126 |
Q |
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| T |
56209744 |
tgggctaaactcgatgaaattcgaaggcaaatcttaaatttcagaaaatctggtaaacttgttgtggcttatgttacttcaattggagttaaagaatatt |
56209645 |
T |
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| Q |
127 |
acgtcgctagtgcatgtaaagaaat |
151 |
Q |
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| T |
56209644 |
acattgcttgtgtatgtgaagaaat |
56209620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 45883436 - 45883384
Alignment:
| Q |
27 |
tggggtaaactagatgaaattcgaaggcaaatcttaaatttcagaaaatcagg |
79 |
Q |
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| T |
45883436 |
tgggctaaactcgatgaaattcgaagacagatcttaaatttcagaaaatcagg |
45883384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 79
Target Start/End: Complemental strand, 45863476 - 45863436
Alignment:
| Q |
39 |
gatgaaattcgaaggcaaatcttaaatttcagaaaatcagg |
79 |
Q |
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| T |
45863476 |
gatgaaattcgaagacaaatcttgaatttcagaaaatcagg |
45863436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 32 - 101
Target Start/End: Complemental strand, 7973648 - 7973579
Alignment:
| Q |
32 |
taaactagatgaaattcgaaggcaaatcttaaatttcagaaaatcaggaaaacttatctttgcttatgtc |
101 |
Q |
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|||||| |||||||||| |||| ||||| ||||||||||||||||||| |||||||| ||||||||||| |
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| T |
7973648 |
taaactcgatgaaattcaaagggaaatcataaatttcagaaaatcaggtaaacttattgttgcttatgtc |
7973579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 24348488 - 24348540
Alignment:
| Q |
27 |
tggggtaaactagatgaaattcgaaggcaaatcttaaatttcagaaaatcagg |
79 |
Q |
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| T |
24348488 |
tggggtaaagtagaagaaattcgaaggcacatcttgaatttcaaaaaatcagg |
24348540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 10520311 - 10520360
Alignment:
| Q |
27 |
tggggtaaactagatgaaattcgaaggcaaatcttaaatttcagaaaatc |
76 |
Q |
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| T |
10520311 |
tgggctaaacttgatgagattcaaaggcaaattttaaatttcagaaaatc |
10520360 |
T |
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