View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10376_high_4 (Length: 326)

Name: NF10376_high_4
Description: NF10376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10376_high_4
NF10376_high_4
[»] chr7 (3 HSPs)
chr7 (54-248)||(46468920-46469114)
chr7 (262-316)||(46470495-46470549)
chr7 (23-67)||(46468863-46468907)
[»] chr4 (1 HSPs)
chr4 (161-242)||(1474252-1474333)


Alignment Details
Target: chr7 (Bit Score: 183; Significance: 6e-99; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 54 - 248
Target Start/End: Original strand, 46468920 - 46469114
Alignment:
Q  54 atcttgaataaattgatatttttgctgtgttgcctacatatattaattaagcaacaataacaataaatacggtaaatttatatgggtctgcttctagttt 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  46468920 atcttgaataaattgatatttttgctgtgttgcctacatatattaattaagcaacaataacaataaatacggtaaatttatatgggtttgcttctagttt 46469019  T
Q  154 ttcacatatctctctttgggtgtgaatggagagattgatctcggcggtgtttccatttcaccgagttaggagtcgaatactgaatcttgcattag 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  46469020 ttcacatatctctctttgggtgtgaatggagagattgatctcggcggtgtttccatttcactgagttaggagtcaaatactgaatcttgcattag 46469114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 262 - 316
Target Start/End: Original strand, 46470495 - 46470549
Alignment:
Q  262 atttatatattatctgttataacgtgtgatgctgctgtctggtttattgcctatg 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46470495 atttatatattatctgttataacgtgtgatgctgctgtctggtttattgcctatg 46470549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 46468863 - 46468907
Alignment:
Q  23 tataggttttaactttctaggtttattttctatcttgaataaatt 67  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||    
T  46468863 tataggttttaactttctaggtttattttctatcctgagtaaatt 46468907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 242
Target Start/End: Original strand, 1474252 - 1474333
Alignment:
Q  161 atctctctttgggtgtgaatggagagattgatctcggcggtgtttccatttcaccgagttaggagtcgaatactgaatcttg 242  Q
    |||||| ||||||||||||||||||| | |||||||||||||||| ||||| |  ||||||||| |   |||||||||||||    
T  1474252 atctctatttgggtgtgaatggagaggtagatctcggcggtgtttgcatttaattgagttaggaataagatactgaatcttg 1474333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University