View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10376_low_10 (Length: 263)
Name: NF10376_low_10
Description: NF10376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10376_low_10 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 45870329 - 45870593
Alignment:
| Q |
1 |
tagaagtttgtaagtgataggtaccaaagtgaagtgcctgacaagttatagggagatacttgtgtttctttaattattaatttgaattaattgttagctg |
100 |
Q |
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| T |
45870329 |
tagaagtttgtaagtgataggtaccaaagtgaagtgcctgacaagttatagggagatacttgtgtttctttaattattaatttgaattaattgttagctg |
45870428 |
T |
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| Q |
101 |
agtttactaggttgtagtaaagccctatattgtgataaaactatttttgcattgctaacattttgacgagatttctttttactg--cacaaaaggtgaat |
198 |
Q |
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| T |
45870429 |
agtttactaggttgtagtaaagccctatattgtgataaaactatttttgcattgctaacattttgacgagatttctttttactgcacacaaaaggtgaat |
45870528 |
T |
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| Q |
199 |
atgtaaaaggaaagtagaagggaaatataagcacatgttaaggtataaatgtttgcttgtttttt |
263 |
Q |
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| T |
45870529 |
atgtaaagggaaagtagaagggaaatataagcacatgttaaggtataaatgtttacttgtttttt |
45870593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 103 - 213
Target Start/End: Complemental strand, 45962469 - 45962357
Alignment:
| Q |
103 |
tttactaggttgtagtaaagccctatattgtgataaaactatttttgcattgctaacattttgacgagatttctttttactgcacaaaaggtg--aatat |
200 |
Q |
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| T |
45962469 |
tttactaggttggggtaaagccctggattgtaataaagctattttttcattcttaaaattttgacgagatatctgtttactgcccaaaatgtgaaaatat |
45962370 |
T |
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| Q |
201 |
gtaaaaggaaagt |
213 |
Q |
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| T |
45962369 |
gtaaagggaaagt |
45962357 |
T |
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