View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10376_low_11 (Length: 263)
Name: NF10376_low_11
Description: NF10376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10376_low_11 |
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| [»] scaffold0489 (1 HSPs) |
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| [»] scaffold0140 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 5 - 247
Target Start/End: Original strand, 2460456 - 2460695
Alignment:
| Q |
5 |
gagaagcagagaaacatgggaagaccaccttgttgtgacaaagaaggtgttaaaaaaggaccatggactcctgaagaagatatcatacttgttacttata |
104 |
Q |
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| T |
2460456 |
gagaaacaaagaaacatgggaagaccaccttgttgtgacaaagaaggtgttaaaaaaggaccatggactcctgaagaagatatcatacttgttacttata |
2460555 |
T |
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| Q |
105 |
tacaagaacatggtcctggaaattggagggctgttccaaccaagacaggttaataatagtagttcataactttaataattgcaatatattttcattaaaa |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||| |
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| T |
2460556 |
tacaagaacatggtcctggaaattggagggctgttccaaccaagacaggttaataa---tagttcataactttaagaattgcaatattttttcattaaaa |
2460652 |
T |
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| Q |
205 |
ttatatttattggcttttttctttgttccatagtataacatag |
247 |
Q |
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| T |
2460653 |
ttatatttattggcttttttctttgttctatagtatatcatag |
2460695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 33929284 - 33929171
Alignment:
| Q |
19 |
catgggaagaccaccttgttgtgacaaagaaggtgttaaaaaaggaccatggactcctgaagaagatatcatacttgttacttatatacaagaacatggt |
118 |
Q |
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|||||||||||| ||||||||||| |||| || | || ||||| |||||||| ||||||||||||||||| |||||| |||| || |||||||||||| |
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| T |
33929284 |
catgggaagacctccttgttgtgaaaaagttggcatcaagaaaggtccatggacacctgaagaagatatcatccttgtttcttacatccaagaacatggt |
33929185 |
T |
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| Q |
119 |
cctggaaattggag |
132 |
Q |
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| T |
33929184 |
ccaggaaattggag |
33929171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 26 - 147
Target Start/End: Original strand, 3615819 - 3615940
Alignment:
| Q |
26 |
agaccaccttgttgtgacaaagaaggtgttaaaaaaggaccatggactcctgaagaagatatcatacttgttacttatatacaagaacatggtcctggaa |
125 |
Q |
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|||||||| |||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| | ||| ||||||| ||||||||||||||||||| |
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| T |
3615819 |
agaccaccatgttgtgataaagaaggtgtgaaaaaaggaccttggactcctgaagaagatatcattttggtttcttatattcaagaacatggtcctggaa |
3615918 |
T |
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| Q |
126 |
attggagggctgttccaaccaa |
147 |
Q |
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| T |
3615919 |
attggaaagctgttcctaccaa |
3615940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0489 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0489
Description:
Target: scaffold0489; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 20 - 147
Target Start/End: Complemental strand, 10961 - 10834
Alignment:
| Q |
20 |
atgggaagaccaccttgttgtgacaaagaaggtgttaaaaaaggaccatggactcctgaagaagatatcatacttgttacttatatacaagaacatggtc |
119 |
Q |
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|||||||| ||||| |||||||| ||| ||| ||||||||||||| ||||||||||||||||||||||| | ||| |||| || ||| ||||||| | |
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| T |
10961 |
atgggaaggccaccatgttgtgagaaactagggattaaaaaaggaccttggactcctgaagaagatatcatcttagtttcttacattcaacaacatggac |
10862 |
T |
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| Q |
120 |
ctggaaattggagggctgttccaaccaa |
147 |
Q |
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|||| |||||||| ||||||||||||| |
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| T |
10861 |
ctgggaattggagatctgttccaaccaa |
10834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 20 - 147
Target Start/End: Original strand, 10067 - 10194
Alignment:
| Q |
20 |
atgggaagaccaccttgttgtgacaaagaaggtgttaaaaaaggaccatggactcctgaagaagatatcatacttgttacttatatacaagaacatggtc |
119 |
Q |
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|||||||| ||||| |||||||| ||| ||| ||||||||||||| ||||||||||||||||||||||| | ||| |||| || ||| ||||||| | |
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| T |
10067 |
atgggaaggccaccatgttgtgagaaactagggattaaaaaaggaccttggactcctgaagaagatatcatcttagtttcttacattcaacaacatggac |
10166 |
T |
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| Q |
120 |
ctggaaattggagggctgttccaaccaa |
147 |
Q |
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|||| |||||||| ||||||||||||| |
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| T |
10167 |
ctgggaattggagatctgttccaaccaa |
10194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 29570157 - 29570223
Alignment:
| Q |
20 |
atgggaagaccaccttgttgtgacaaagaaggtgttaaaaaaggaccatggactcctgaagaagata |
86 |
Q |
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|||||||||| ||||||||||||||||| || | || ||||||||||||||| |||| ||||||| |
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| T |
29570157 |
atgggaagacaaccttgttgtgacaaagttggattgaagaaaggaccatggactgctgaggaagata |
29570223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 4612089 - 4612023
Alignment:
| Q |
19 |
catgggaagaccaccttgttgtgacaaagaaggtgttaaaaaaggaccatggactcctgaagaagat |
85 |
Q |
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|||||||||| | |||||||||||||||||| ||||| | |||||||||| ||||||| |||||| |
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| T |
4612089 |
catgggaagagctccttgttgtgacaaagaaaaagttaagagaggaccatggtctcctgatgaagat |
4612023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 33378245 - 33378309
Alignment:
| Q |
20 |
atgggaagaccaccttgttgtgacaaagaaggtgttaaaaaaggaccatggactcctgaagaaga |
84 |
Q |
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|||||||| | ||||||||||||||||| ||| | |||||||| ||||||||| | |||||||| |
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| T |
33378245 |
atgggaaggcaaccttgttgtgacaaagtaggattgaaaaaagggccatggactgcagaagaaga |
33378309 |
T |
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