View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10376_low_14 (Length: 249)
Name: NF10376_low_14
Description: NF10376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10376_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 67 - 184
Target Start/End: Complemental strand, 27251218 - 27251101
Alignment:
| Q |
67 |
acctcttgtagttccaatatagaatctaaagtttccttggaataagttataaaatctgaatatgcatctctaactttatcatctgattcactgaatgaag |
166 |
Q |
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| T |
27251218 |
acctcttgcagttccaatatagaatccaaagtctccttggaagaagttatcaaatcttcatatgcacctcgaactgtctcatctgattcacagaatgatt |
27251119 |
T |
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| Q |
167 |
cttttattgattcctgca |
184 |
Q |
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| T |
27251118 |
cttttattgattcctgca |
27251101 |
T |
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Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 67 - 191
Target Start/End: Complemental strand, 1743167 - 1743043
Alignment:
| Q |
67 |
acctcttgtagttccaatatagaatctaaagtttccttggaataagttataaaatctgaatatgcatctctaactttatcatctgattcactgaatgaag |
166 |
Q |
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|||||||| ||||||||||||||||| ||||| ||||||||| ||||||| |||||| |||||| |||||||| | || |||||||||| ||||| |
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| T |
1743167 |
acctcttgaagttccaatatagaatccaaagtctccttggaagaagttatcaaatcttcatatgcgcctctaactgtctcgtctgattcacaaaatgatt |
1743068 |
T |
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| Q |
167 |
cttttattgattcctgcagacaatt |
191 |
Q |
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|||||||||||||||||||| |||| |
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| T |
1743067 |
cttttattgattcctgcagaaaatt |
1743043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 6517383 - 6517425
Alignment:
| Q |
11 |
cacagacacatgtttaggatagaaatgcagctaatgtacaaca |
53 |
Q |
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| T |
6517383 |
cacaaacacatgtttaggatagaaatgcagctaatgtacaaca |
6517425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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