View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10376_low_16 (Length: 241)
Name: NF10376_low_16
Description: NF10376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10376_low_16 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 45870800 - 45870576
Alignment:
| Q |
18 |
aagttctacattaagtaaatgccagagactttaaaaggccgcaaataagtaacataaacttcaaatgacataagatgttggaccaagtgaacctttacct |
117 |
Q |
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| T |
45870800 |
aagttctacattaagtaaatgccagagactttaaaaggccgcaaataagtaacataaacttcaaatgacataagatgttggaccaagtgaacctttacct |
45870701 |
T |
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| Q |
118 |
tctaaaggaacaaccaagtactatacatttgaaataccataaccctgtatgactcacaaaaacaccagtaaaattatttttgaacatcaacgaatcaata |
217 |
Q |
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| T |
45870700 |
tctaaaggaacaaccaagtactgtacatttgaaataccataaccctgtatgactcacaaaaacaccagtaaaattatttttgaacatcaacgaatcaata |
45870601 |
T |
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| Q |
218 |
atcaat-aaaaaacaagcaaacatt |
241 |
Q |
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| T |
45870600 |
aacaataaaaaaacaagtaaacatt |
45870576 |
T |
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Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 22 - 198
Target Start/End: Complemental strand, 40893706 - 40893530
Alignment:
| Q |
22 |
tctacattaagtaaatgccagagactttaaaaggccgcaaataagtaacata-aacttcaaatgacataagatgttggaccaagtgaacctttaccttct |
120 |
Q |
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||||| ||||||||||| ||||| | |||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
40893706 |
tctacgttaagtaaatggcagaggccttaaaaggccacaaataagtaacatctaacttcaaatgacataagatgtttgaccaagtgaacctttactttct |
40893607 |
T |
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| Q |
121 |
aaagg-aacaaccaagtactatacatttgaaataccataaccctgtatgactcacaaaaacaccagtaaaattattttt |
198 |
Q |
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| T |
40893606 |
aaaggcaaaaactaaatacta-acatttgaaa-cccgtaaccctgtatgacttgcaaaaacaccagtaaagttaatttt |
40893530 |
T |
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