View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10376_low_18 (Length: 230)
Name: NF10376_low_18
Description: NF10376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10376_low_18 |
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| [»] chr5 (7 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 41366502 - 41366273
Alignment:
| Q |
1 |
cagtctctctatgaagtttttcaagttttttccttggccaacttaacatttgaagaattttaatagaaggatacaaatctgcaaaagaaaatcctcccaa |
100 |
Q |
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| T |
41366502 |
cagtctctctatgaagtttttcaagttttttccttggccaacttaacatttgaagaattttaatagaaggatacaaatctgcaaaagaaaatcctcccaa |
41366403 |
T |
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| Q |
101 |
tagcttaaatatttccttcattgctgatttaaacacttcttggtgtttattcttttttccaaatgctgtccgcgctgtcatcccaattgttaatgagaga |
200 |
Q |
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| T |
41366402 |
tagcttaaatatttccttcattgctgatttaaacacttcttggtgtttattcttttttccaaatgctgcccgcgctgtcatcccaattgttaatgagaga |
41366303 |
T |
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| Q |
201 |
atcatttgagtgagattaacaactgatcct |
230 |
Q |
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| T |
41366302 |
atcatttgagtgagattaacaaccgatcct |
41366273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 50 - 230
Target Start/End: Complemental strand, 41332273 - 41332093
Alignment:
| Q |
50 |
ttgaagaattttaatagaaggatacaaatctgcaaaagaaaatcctcccaatagcttaaatatttccttcattgctgatttaaacacttcttggtgttta |
149 |
Q |
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|||||| |||||||||||||||||||||||||||| ||||||||| |||||| |||| || || |||||||||| | ||||| ||||||| | || |
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| T |
41332273 |
ttgaagcattttaatagaaggatacaaatctgcaatttcaaatcctcctaatagcaccaatactttctccattgctgatatgaacacatcttggtttcta |
41332174 |
T |
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| Q |
150 |
ttcttttttccaaatgctgtccgcgctgtcatcccaattgttaatgagagaatcatttgagtgagattaacaactgatcct |
230 |
Q |
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| T |
41332173 |
ttccttttcccaaaagctgcccgcgctgttatcccatttgtcattgagaaaatcttccgagtgagatttacaaccgatcct |
41332093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 50 - 230
Target Start/End: Complemental strand, 41328260 - 41328080
Alignment:
| Q |
50 |
ttgaagaattttaatagaaggatacaaatctgcaaaagaaaatcctcccaatagcttaaatatttccttcattgctgatttaaacacttcttggtgttta |
149 |
Q |
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|||||| | |||||||||||||||||||||||||| ||||| ||| |||||| | || || || || ||||| | | ||||| ||||||||| || |
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| T |
41328260 |
ttgaagcaatttaatagaaggatacaaatctgcaatttcaaatcttcctaatagcaccactactttctccaatgctggtatgaacacatcttggtgtcta |
41328161 |
T |
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| Q |
150 |
ttcttttttccaaatgctgtccgcgctgtcatcccaattgttaatgagagaatcatttgagtgagattaacaactgatcct |
230 |
Q |
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| T |
41328160 |
ttccttttcccaaaagctgcccgcgctgttatcccatttgtcattgagaaaatcttccgagtgagattaacaactgatcct |
41328080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 50 - 168
Target Start/End: Original strand, 31178553 - 31178671
Alignment:
| Q |
50 |
ttgaagaattttaatagaaggatacaaatctgcaaaagaaaatcctcccaatagcttaaatatttccttcattgctgatttaaacacttcttggtgttta |
149 |
Q |
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| T |
31178553 |
ttgaagcattttaatagaaggatacacatcagcaatacaaaatcctcccatcaaactcgctatttcctttattgctgattggaacacttgttggtgttta |
31178652 |
T |
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| Q |
150 |
ttcttttttccaaatgctg |
168 |
Q |
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| T |
31178653 |
ttccttttcccaaacgctg |
31178671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 120 - 230
Target Start/End: Complemental strand, 41316223 - 41316113
Alignment:
| Q |
120 |
attgctgatttaaacacttcttggtgtttattcttttttccaaatgctgtccgcgctgtcatcccaattgttaatgagagaatcatttgagtgagattaa |
219 |
Q |
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| T |
41316223 |
attgctgatctaaacacttcttggtgtttgctccttttcccaaaagccgctcgcgctgttatcccatatgtcgttgacaaaatcttctgagtgagattaa |
41316124 |
T |
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| Q |
220 |
caactgatcct |
230 |
Q |
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| T |
41316123 |
caactgatcct |
41316113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 12 - 130
Target Start/End: Complemental strand, 41369821 - 41369703
Alignment:
| Q |
12 |
tgaagtttttcaagttttttccttggccaacttaacatttgaagaattttaatagaaggatacaaatctgcaaaagaaaatcctcccaatagcttaaata |
111 |
Q |
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||||||||||| | ||| || ||| || ||||| | ||||||| ||||||||||||||||||||||| |||| |||||||| |||||| ||| | | |
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| T |
41369821 |
tgaagtttttccattttggtctttgccctacttaccctttgaagtattttaatagaaggatacaaatcagcaatgcaaaatccttccaataactttattg |
41369722 |
T |
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| Q |
112 |
tttccttcattgctgattt |
130 |
Q |
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| T |
41369721 |
attcctccattgctgattt |
41369703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 168
Target Start/End: Complemental strand, 41337203 - 41337084
Alignment:
| Q |
49 |
tttgaagaattttaatagaaggatacaaatctgcaaaagaaaatcctcccaatagcttaaatatttccttcattgctgatttaaacacttcttggtgttt |
148 |
Q |
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||||||| |||||||||||||||||||| || |||| | ||||| |||||||||| ||| ||||| |||| |||||| |||| || ||||||| | |
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| T |
41337203 |
tttgaagtattttaatagaaggatacaagtcagcaatacaaaattctcccaataggcccaatgcttcctctattgttgatttgaacaattgttggtgtct |
41337104 |
T |
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| Q |
149 |
attcttttttccaaatgctg |
168 |
Q |
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| T |
41337103 |
gttctttttcccaaacgctg |
41337084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 157
Target Start/End: Original strand, 17249293 - 17249393
Alignment:
| Q |
57 |
attttaatagaaggatacaaatctgcaaaagaaaatcctcccaatagcttaaatatttccttcattgctgatttaaacacttcttggtgtttattctttt |
156 |
Q |
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||||| ||||||||||||||||| ||| | ||||||||||||| | | | |||||||| ||||||||||| ||||||| ||||||||| ||| ||| |
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| T |
17249293 |
attttgatagaaggatacaaatcaacaatacaaaatcctcccaacaaactcactatttcctctattgctgatttgaacacttgttggtgtttgttccttt |
17249392 |
T |
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| Q |
157 |
t |
157 |
Q |
| |
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| T |
17249393 |
t |
17249393 |
T |
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